opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160700
microbial community in surface soil collected at O-3 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
35,767
Reads
1,345
Observed features
6.701
Shannon
0.93
Evenness
1,345
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194881
Per-run QC
- 16S identity
- 83.3%
- Q30
- 92.4%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 680 (1.9%)
- ASV_22223 · Candidatus Udaeobacter 861 (2.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 25.6%
- Actinomycetota 21.3%
- Acidobacteriota 12.6%
- Planctomycetota 9.0%
- Verrucomicrobiota 8.6%
- Bacteroidota 5.7%
- Myxococcota 5.4%
- everything else 11.9%
- Alphaproteobacteria 15.4%
- Gammaproteobacteria 10.3%
- Actinobacteria 8.7%
- Verrucomicrobiia 8.6%
- Thermoleophilia 8.4%
- Planctomycetes 7.8%
- Bacteroidia 5.7%
- everything else 35.2%
- Hyphomicrobiales 9.7%
- Incertae Sedis 7.0%
- Chthoniobacterales 6.4%
- Burkholderiales 5.9%
- Gaiellales 5.1%
- Vicinamibacterales 5.1%
- Gemmatales 3.8%
- everything else 56.9%
- Incertae Sedis 24.1%
- Xanthobacteraceae 7.1%
- Chthoniobacteraceae 5.8%
- Gemmataceae 3.8%
- Chitinophagaceae 3.6%
- Acidothermaceae 1.8%
- Isosphaeraceae 1.8%
- everything else 51.9%
- Incertae Sedis 52.4%
- Candidatus Udaeobacter 5.1%
- Bradyrhizobium 2.5%
- Acidothermus 1.8%
- Nocardioides 1.4%
- Acidiferrimicrobium 1.3%
- Acidibacter 1.3%
- everything else 34.0%
- uncultured bacterium 68.2%
- metagenome 3.6%
- uncultured Acidobacteria bacterium 2.6%
- Bradyrhizobium elkanii 1.9%
- uncultured Alphaproteobacteria bacterium 1.0%
- uncultured Verrucomicrobia bacterium 0.9%
- uncultured planctomycete 0.8%
- everything else 21.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.