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SAMD00160709
microbial community in rhizosphere soil collected at I-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
31,331
Reads
1,413
Observed features
6.815
Shannon
0.94
Evenness
1,413
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194890
Per-run QC
- 16S identity
- 83.9%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 277 (0.9%)
- ASV_33334 · Rhizobacter 217 (0.7%)
- ASV_34773 · Incertae Sedis 141 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 26.4%
- Acidobacteriota 17.9%
- Actinomycetota 15.3%
- Planctomycetota 7.4%
- Chloroflexota 6.6%
- Bacteroidota 5.0%
- Myxococcota 4.5%
- everything else 17.0%
- Alphaproteobacteria 14.0%
- Gammaproteobacteria 12.4%
- Acidobacteriae 7.3%
- Vicinamibacteria 7.0%
- Thermoleophilia 6.3%
- Planctomycetes 6.3%
- Actinobacteria 6.2%
- everything else 40.6%
- Hyphomicrobiales 9.3%
- Burkholderiales 8.8%
- Incertae Sedis 7.7%
- Vicinamibacterales 6.4%
- Chitinophagales 4.2%
- Terriglobales 4.1%
- Gaiellales 3.5%
- everything else 56.0%
- Incertae Sedis 27.4%
- Xanthobacteraceae 5.9%
- Chitinophagaceae 3.9%
- Nitrosomonadaceae 3.2%
- Gemmatimonadaceae 2.6%
- Gemmataceae 2.5%
- Chthoniobacteraceae 2.2%
- everything else 52.3%
- Incertae Sedis 52.8%
- Bradyrhizobium 2.1%
- Ellin6067 1.9%
- Candidatus Udaeobacter 1.5%
- Candidatus Solibacter 1.4%
- Acidibacter 1.4%
- Gemmatimonas 1.2%
- everything else 37.8%
- uncultured bacterium 65.5%
- metagenome 4.7%
- uncultured Acidobacteria bacterium 3.0%
- Bradyrhizobium elkanii 1.6%
- uncultured proteobacterium 1.2%
- uncultured Alphaproteobacteria bacterium 1.2%
- uncultured Comamonadaceae bacterium 0.9%
- everything else 22.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.