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SAMD00160739
microbial community in rhizosphere soil collected at N-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
28,806
Reads
1,281
Observed features
6.712
Shannon
0.938
Evenness
1,281
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194920
Per-run QC
- 16S identity
- 81.5%
- Q30
- 92.2%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 30.3%
- Actinomycetota 19.8%
- Acidobacteriota 13.8%
- Planctomycetota 9.7%
- Bacteroidota 6.9%
- Verrucomicrobiota 5.0%
- Chloroflexota 3.7%
- everything else 10.7%
- Alphaproteobacteria 19.1%
- Gammaproteobacteria 11.3%
- Thermoleophilia 9.2%
- Acidobacteriae 8.1%
- Planctomycetes 8.1%
- Actinobacteria 7.9%
- Bacteroidia 6.9%
- everything else 29.5%
- Hyphomicrobiales 10.5%
- Burkholderiales 6.4%
- Gaiellales 5.7%
- Incertae Sedis 5.3%
- Vicinamibacterales 4.5%
- Chitinophagales 3.8%
- Terriglobales 3.7%
- everything else 60.2%
- Incertae Sedis 25.3%
- Xanthobacteraceae 7.1%
- Chitinophagaceae 3.6%
- Gemmataceae 3.2%
- Acidothermaceae 2.4%
- Chthoniobacteraceae 2.2%
- Solirubrobacteraceae 2.1%
- everything else 54.2%
- Incertae Sedis 52.9%
- Bradyrhizobium 2.5%
- Acidothermus 2.4%
- Acidibacter 1.4%
- Candidatus Udaeobacter 1.4%
- Candidatus Solibacter 1.3%
- Acidiferrimicrobium 1.3%
- everything else 37.0%
- uncultured bacterium 63.7%
- metagenome 4.6%
- uncultured Acidobacteria bacterium 2.8%
- uncultured forest soil bacterium 2.1%
- Bradyrhizobium elkanii 1.6%
- uncultured proteobacterium 1.2%
- uncultured Alphaproteobacteria bacterium 1.2%
- everything else 22.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.