opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160697
microbial community in rhizosphere soil collected at O-2 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
29,118
Reads
1,146
Observed features
6.587
Shannon
0.935
Evenness
1,146
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194878
Per-run QC
- 16S identity
- 81.7%
- Q30
- 92.3%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 457 (1.6%)
- ASV_22223 · Candidatus Udaeobacter 631 (2.2%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 23.5%
- Acidobacteriota 18.1%
- Actinomycetota 14.0%
- Verrucomicrobiota 9.2%
- Planctomycetota 8.4%
- Chloroflexota 6.3%
- Myxococcota 5.8%
- everything else 14.7%
- Alphaproteobacteria 12.2%
- Gammaproteobacteria 11.3%
- Vicinamibacteria 9.5%
- Verrucomicrobiia 9.2%
- Planctomycetes 7.1%
- Actinobacteria 6.0%
- Acidobacteriae 5.7%
- everything else 38.9%
- Vicinamibacterales 9.2%
- Hyphomicrobiales 8.5%
- Incertae Sedis 8.1%
- Burkholderiales 7.3%
- Chthoniobacterales 7.2%
- Gemmatales 4.0%
- Chitinophagales 3.4%
- everything else 52.4%
- Incertae Sedis 28.5%
- Chthoniobacteraceae 6.7%
- Xanthobacteraceae 6.2%
- Gemmataceae 4.0%
- Chitinophagaceae 3.1%
- Nitrosomonadaceae 2.5%
- Comamonadaceae 2.1%
- everything else 46.9%
- Incertae Sedis 56.0%
- Candidatus Udaeobacter 6.0%
- Bradyrhizobium 2.3%
- Ellin6067 1.7%
- Acidibacter 1.4%
- Acidothermus 1.3%
- Nocardioides 1.2%
- everything else 30.1%
- uncultured bacterium 69.8%
- uncultured Acidobacteria bacterium 3.5%
- metagenome 3.4%
- Bradyrhizobium elkanii 1.6%
- uncultured Comamonadaceae bacterium 1.0%
- uncultured Verrucomicrobia bacterium 0.9%
- uncultured Alphaproteobacteria bacterium 0.8%
- everything else 18.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.