opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160699
microbial community in rhizosphere soil collected at O-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
33,061
Reads
1,258
Observed features
6.668
Shannon
0.934
Evenness
1,258
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194880
Per-run QC
- 16S identity
- 83.0%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 553 (1.7%)
- ASV_22223 · Candidatus Udaeobacter 575 (1.7%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 25.7%
- Actinomycetota 17.3%
- Acidobacteriota 15.6%
- Planctomycetota 7.8%
- Verrucomicrobiota 7.3%
- Myxococcota 6.4%
- Chloroflexota 5.5%
- everything else 14.4%
- Alphaproteobacteria 13.8%
- Gammaproteobacteria 11.8%
- Thermoleophilia 8.0%
- Verrucomicrobiia 7.3%
- Vicinamibacteria 7.0%
- Planctomycetes 6.6%
- Actinobacteria 6.2%
- everything else 39.1%
- Hyphomicrobiales 9.2%
- Incertae Sedis 8.4%
- Burkholderiales 7.6%
- Vicinamibacterales 6.5%
- Gaiellales 5.3%
- Chthoniobacterales 5.3%
- Chitinophagales 3.7%
- everything else 54.0%
- Incertae Sedis 27.6%
- Xanthobacteraceae 6.4%
- Chthoniobacteraceae 4.9%
- Chitinophagaceae 3.4%
- Gemmataceae 3.3%
- Nitrosomonadaceae 2.7%
- Comamonadaceae 1.9%
- everything else 49.7%
- Incertae Sedis 55.6%
- Candidatus Udaeobacter 4.3%
- Bradyrhizobium 2.5%
- Ellin6067 1.8%
- Acidothermus 1.6%
- Acidibacter 1.3%
- Candidatus Solibacter 1.3%
- everything else 31.6%
- uncultured bacterium 69.2%
- metagenome 4.0%
- uncultured Acidobacteria bacterium 3.4%
- Bradyrhizobium elkanii 1.7%
- uncultured Alphaproteobacteria bacterium 1.0%
- uncultured Comamonadaceae bacterium 1.0%
- uncultured planctomycete 0.8%
- everything else 19.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.