opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160703
microbial community in rhizosphere soil collected at O-3 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,965
Reads
1,240
Observed features
6.587
Shannon
0.925
Evenness
1,240
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194884
Per-run QC
- 16S identity
- 82.8%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_1 · Bradyrhizobium 410 (1.5%)
- ASV_33334 · Rhizobacter 69 (0.3%)
- ASV_34773 · Incertae Sedis 76 (0.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 25.3%
- Acidobacteriota 19.6%
- Actinomycetota 16.7%
- Planctomycetota 9.7%
- Verrucomicrobiota 8.5%
- Myxococcota 4.2%
- Chloroflexota 4.2%
- everything else 12.0%
- Alphaproteobacteria 14.7%
- Vicinamibacteria 10.8%
- Gammaproteobacteria 10.6%
- Planctomycetes 8.5%
- Verrucomicrobiia 8.5%
- Thermoleophilia 7.3%
- Acidobacteriae 6.5%
- everything else 33.0%
- Vicinamibacterales 10.3%
- Hyphomicrobiales 9.2%
- Incertae Sedis 7.2%
- Chthoniobacterales 7.0%
- Burkholderiales 6.5%
- Gemmatales 4.5%
- Gaiellales 4.5%
- everything else 50.9%
- Incertae Sedis 29.7%
- Xanthobacteraceae 6.6%
- Chthoniobacteraceae 6.5%
- Gemmataceae 4.5%
- Chitinophagaceae 2.6%
- Nitrosomonadaceae 2.3%
- Isosphaeraceae 1.9%
- everything else 46.1%
- Incertae Sedis 55.9%
- Candidatus Udaeobacter 6.0%
- Bradyrhizobium 2.3%
- Acidothermus 1.5%
- Acidibacter 1.4%
- Ellin6067 1.2%
- Acidiferrimicrobium 1.1%
- everything else 30.7%
- uncultured bacterium 68.6%
- uncultured Acidobacteria bacterium 5.4%
- metagenome 3.2%
- Bradyrhizobium elkanii 1.7%
- uncultured Verrucomicrobia bacterium 1.3%
- uncultured forest soil bacterium 1.0%
- uncultured Alphaproteobacteria bacterium 0.9%
- everything else 17.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.