opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160705
microbial community in rhizosphere soil collected at O-3 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
30,086
Reads
1,161
Observed features
6.575
Shannon
0.932
Evenness
1,161
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194886
Per-run QC
- 16S identity
- 82.9%
- Q30
- 92.3%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 604 (2.0%)
- ASV_22223 · Candidatus Udaeobacter 707 (2.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 25.8%
- Actinomycetota 22.0%
- Acidobacteriota 13.5%
- Planctomycetota 9.4%
- Verrucomicrobiota 7.9%
- Myxococcota 5.1%
- Bacteroidota 4.9%
- everything else 11.4%
- Alphaproteobacteria 16.1%
- Thermoleophilia 9.8%
- Gammaproteobacteria 9.7%
- Planctomycetes 8.4%
- Verrucomicrobiia 7.9%
- Actinobacteria 7.9%
- Vicinamibacteria 6.1%
- everything else 34.3%
- Hyphomicrobiales 10.8%
- Incertae Sedis 7.2%
- Gaiellales 6.4%
- Chthoniobacterales 6.0%
- Vicinamibacterales 5.7%
- Burkholderiales 5.7%
- Gemmatales 4.2%
- everything else 54.2%
- Incertae Sedis 25.7%
- Xanthobacteraceae 8.0%
- Chthoniobacteraceae 5.3%
- Gemmataceae 4.2%
- Chitinophagaceae 3.1%
- Acidothermaceae 2.3%
- Solirubrobacteraceae 2.0%
- everything else 49.4%
- Incertae Sedis 53.3%
- Candidatus Udaeobacter 4.8%
- Bradyrhizobium 2.8%
- Acidothermus 2.3%
- Acidiferrimicrobium 1.6%
- Acidibacter 1.4%
- Candidatus Solibacter 1.3%
- everything else 32.6%
- uncultured bacterium 69.3%
- uncultured Acidobacteria bacterium 3.0%
- metagenome 2.7%
- Bradyrhizobium elkanii 2.0%
- uncultured planctomycete 1.0%
- uncultured Verrucomicrobia bacterium 1.0%
- uncultured forest soil bacterium 0.9%
- everything else 20.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.