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SAMD00160702
microbial community in surface soil collected at O-3 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
36,872
Reads
1,395
Observed features
6.743
Shannon
0.931
Evenness
1,395
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194883
Per-run QC
- 16S identity
- 82.4%
- Q30
- 92.4%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_11112 · Bradyrhizobium 664 (1.8%)
- ASV_22223 · Candidatus Udaeobacter 830 (2.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 26.5%
- Actinomycetota 24.4%
- Acidobacteriota 11.9%
- Planctomycetota 8.3%
- Verrucomicrobiota 7.5%
- Bacteroidota 5.3%
- Myxococcota 4.7%
- everything else 11.4%
- Alphaproteobacteria 16.3%
- Thermoleophilia 10.7%
- Gammaproteobacteria 10.2%
- Actinobacteria 9.4%
- Verrucomicrobiia 7.5%
- Planctomycetes 7.2%
- Vicinamibacteria 5.4%
- everything else 33.3%
- Hyphomicrobiales 10.6%
- Incertae Sedis 6.7%
- Gaiellales 6.4%
- Burkholderiales 5.9%
- Chthoniobacterales 5.8%
- Vicinamibacterales 5.1%
- Solirubrobacterales 4.3%
- everything else 55.4%
- Incertae Sedis 23.9%
- Xanthobacteraceae 7.6%
- Chthoniobacteraceae 5.1%
- Gemmataceae 3.4%
- Chitinophagaceae 3.1%
- 67-14 2.1%
- Solirubrobacteraceae 2.1%
- everything else 52.6%
- Incertae Sedis 52.3%
- Candidatus Udaeobacter 4.5%
- Bradyrhizobium 2.5%
- Acidothermus 1.9%
- Nocardioides 1.5%
- Acidiferrimicrobium 1.4%
- Gaiella 1.3%
- everything else 34.7%
- uncultured bacterium 68.5%
- metagenome 3.4%
- uncultured Acidobacteria bacterium 2.6%
- Bradyrhizobium elkanii 1.8%
- uncultured Verrucomicrobia bacterium 1.2%
- uncultured Alphaproteobacteria bacterium 1.0%
- uncultured forest soil bacterium 0.9%
- everything else 20.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.