opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160704
microbial community in rhizosphere soil collected at O-3 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
28,324
Reads
1,162
Observed features
6.526
Shannon
0.925
Evenness
1,162
Chao1
Where and when
- Collected
- 2014-06-06
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194885
Per-run QC
- 16S identity
- 84.1%
- Q30
- 92.4%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_11112 · Bradyrhizobium 572 (2.0%)
- ASV_22223 · Candidatus Udaeobacter 743 (2.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 26.9%
- Actinomycetota 20.8%
- Acidobacteriota 13.4%
- Planctomycetota 10.3%
- Verrucomicrobiota 7.5%
- Chloroflexota 4.8%
- Bacteroidota 4.5%
- everything else 11.9%
- Alphaproteobacteria 15.8%
- Gammaproteobacteria 11.0%
- Thermoleophilia 9.7%
- Planctomycetes 9.1%
- Verrucomicrobiia 7.5%
- Actinobacteria 7.5%
- Vicinamibacteria 5.9%
- everything else 33.5%
- Hyphomicrobiales 11.1%
- Incertae Sedis 6.8%
- Gaiellales 6.3%
- Burkholderiales 6.0%
- Chthoniobacterales 6.0%
- Vicinamibacterales 5.7%
- Gemmatales 4.8%
- everything else 53.3%
- Incertae Sedis 26.4%
- Xanthobacteraceae 8.6%
- Chthoniobacteraceae 5.4%
- Gemmataceae 4.8%
- Chitinophagaceae 3.3%
- Isosphaeraceae 2.1%
- Nitrosomonadaceae 2.0%
- everything else 47.4%
- Incertae Sedis 54.3%
- Candidatus Udaeobacter 4.8%
- Bradyrhizobium 2.8%
- Acidibacter 1.7%
- Acidothermus 1.5%
- Puia 1.4%
- Gaiella 1.3%
- everything else 32.3%
- uncultured bacterium 66.6%
- metagenome 3.8%
- uncultured Acidobacteria bacterium 2.9%
- Bradyrhizobium elkanii 2.0%
- Withania somnifera 1.3%
- uncultured planctomycete 1.1%
- uncultured forest soil bacterium 1.0%
- everything else 21.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.