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SAMD00160707
microbial community in surface soil collected at I-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
29,612
Reads
1,479
Observed features
6.853
Shannon
0.939
Evenness
1,479
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194888
Per-run QC
- 16S identity
- 82.0%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 193 (0.7%)
- ASV_33334 · Rhizobacter 121 (0.4%)
- ASV_34773 · Incertae Sedis 135 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 31.7%
- Acidobacteriota 18.2%
- Actinomycetota 10.7%
- Bacteroidota 9.6%
- Planctomycetota 6.4%
- Myxococcota 4.5%
- Chloroflexota 3.7%
- everything else 15.2%
- Gammaproteobacteria 18.2%
- Alphaproteobacteria 13.5%
- Vicinamibacteria 11.7%
- Bacteroidia 9.6%
- Planctomycetes 5.4%
- Actinobacteria 5.2%
- Thermoleophilia 3.6%
- everything else 32.8%
- Burkholderiales 12.4%
- Vicinamibacterales 10.8%
- Chitinophagales 7.1%
- Hyphomicrobiales 6.9%
- Incertae Sedis 5.9%
- Gemmatimonadales 3.2%
- Polyangiales 2.2%
- everything else 51.5%
- Incertae Sedis 24.2%
- Chitinophagaceae 6.6%
- Nitrosomonadaceae 4.7%
- Xanthobacteraceae 4.1%
- Comamonadaceae 3.6%
- Gemmatimonadaceae 3.2%
- Vicinamibacteraceae 2.3%
- everything else 51.3%
- Incertae Sedis 50.2%
- Ellin6067 3.5%
- Acidibacter 2.1%
- Ferruginibacter 1.5%
- Bradyrhizobium 1.5%
- Gemmatimonas 1.5%
- Candidatus Udaeobacter 1.2%
- everything else 38.5%
- uncultured bacterium 63.6%
- metagenome 7.5%
- uncultured Acidobacteria bacterium 4.2%
- uncultured proteobacterium 1.5%
- uncultured soil bacterium 1.1%
- Bradyrhizobium elkanii 1.1%
- uncultured Comamonadaceae bacterium 0.8%
- everything else 20.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.