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SAMD00160714
microbial community in surface soil collected at I-2 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
26,963
Reads
1,250
Observed features
6.743
Shannon
0.946
Evenness
1,250
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194895
Per-run QC
- 16S identity
- 83.8%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 215 (0.8%)
- ASV_33334 · Rhizobacter 159 (0.6%)
- ASV_34773 · Incertae Sedis 159 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.7%
- Archaea 0.3%
- Pseudomonadota 30.5%
- Actinomycetota 15.3%
- Acidobacteriota 15.0%
- Bacteroidota 9.6%
- Planctomycetota 6.9%
- Verrucomicrobiota 4.3%
- Chloroflexota 4.2%
- everything else 14.2%
- Gammaproteobacteria 17.9%
- Alphaproteobacteria 12.6%
- Bacteroidia 9.6%
- Vicinamibacteria 8.7%
- Actinobacteria 6.2%
- Thermoleophilia 5.7%
- Planctomycetes 5.5%
- everything else 33.8%
- Burkholderiales 12.3%
- Vicinamibacterales 8.4%
- Hyphomicrobiales 7.8%
- Chitinophagales 7.2%
- Incertae Sedis 6.0%
- Gemmatimonadales 3.5%
- Chthoniobacterales 3.2%
- everything else 51.5%
- Incertae Sedis 22.1%
- Chitinophagaceae 6.7%
- Xanthobacteraceae 5.2%
- Nitrosomonadaceae 4.1%
- Gemmatimonadaceae 3.5%
- Comamonadaceae 3.4%
- Chthoniobacteraceae 3.0%
- everything else 52.0%
- Incertae Sedis 49.6%
- Ellin6067 3.0%
- Candidatus Udaeobacter 1.9%
- Acidibacter 1.7%
- Bradyrhizobium 1.6%
- Ferruginibacter 1.6%
- Gemmatimonas 1.6%
- everything else 39.0%
- uncultured bacterium 67.5%
- metagenome 6.4%
- uncultured Acidobacteria bacterium 2.5%
- Bradyrhizobium elkanii 1.3%
- uncultured Comamonadaceae bacterium 1.3%
- uncultured actinobacterium 1.2%
- uncultured soil bacterium 1.2%
- everything else 18.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 98% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 97% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.