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SAMD00160724
microbial community in surface soil collected at I-4 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
25,466
Reads
1,293
Observed features
6.753
Shannon
0.943
Evenness
1,293
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194905
Per-run QC
- 16S identity
- 81.5%
- Q30
- 91.8%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 205 (0.8%)
- ASV_33334 · Rhizobacter 122 (0.5%)
- ASV_34773 · Incertae Sedis 91 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 24.7%
- Acidobacteriota 17.7%
- Actinomycetota 15.4%
- Chloroflexota 8.9%
- Planctomycetota 7.6%
- Myxococcota 4.7%
- Bacteroidota 4.4%
- everything else 16.7%
- Alphaproteobacteria 14.1%
- Gammaproteobacteria 10.6%
- Vicinamibacteria 8.3%
- Actinobacteria 7.3%
- Planctomycetes 6.3%
- Acidobacteriae 5.4%
- Thermoleophilia 5.3%
- everything else 42.8%
- Hyphomicrobiales 9.9%
- Incertae Sedis 8.8%
- Burkholderiales 7.8%
- Vicinamibacterales 7.7%
- Chitinophagales 3.3%
- Chthoniobacterales 3.1%
- Gaiellales 2.7%
- everything else 56.7%
- Incertae Sedis 27.9%
- Xanthobacteraceae 6.1%
- Chitinophagaceae 3.1%
- Chthoniobacteraceae 3.0%
- Gemmataceae 2.7%
- Gemmatimonadaceae 2.5%
- Nitrosomonadaceae 2.4%
- everything else 52.3%
- Incertae Sedis 53.5%
- Bradyrhizobium 2.0%
- Candidatus Udaeobacter 1.9%
- Candidatus Solibacter 1.3%
- Ellin6067 1.3%
- Acidiferrimicrobium 1.1%
- Chthoniobacter 1.1%
- everything else 37.8%
- uncultured bacterium 63.2%
- metagenome 5.0%
- uncultured Acidobacteria bacterium 3.2%
- Bradyrhizobium elkanii 1.5%
- uncultured Verrucomicrobia bacterium 1.3%
- uncultured soil bacterium 1.2%
- uncultured Alphaproteobacteria bacterium 1.0%
- everything else 23.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 99% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.