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SAMD00160728
microbial community in rhizosphere soil collected at I-4 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
24,791
Reads
1,258
Observed features
6.742
Shannon
0.945
Evenness
1,258
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194909
Per-run QC
- 16S identity
- 80.1%
- Q30
- 91.7%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 26.0%
- Acidobacteriota 16.4%
- Actinomycetota 14.6%
- Planctomycetota 7.5%
- Chloroflexota 6.9%
- Bacteroidota 6.0%
- Bacillota 5.5%
- everything else 17.2%
- Gammaproteobacteria 13.2%
- Alphaproteobacteria 12.8%
- Vicinamibacteria 7.8%
- Planctomycetes 6.2%
- Actinobacteria 6.1%
- Bacteroidia 6.0%
- Thermoleophilia 5.5%
- everything else 42.4%
- Burkholderiales 9.3%
- Incertae Sedis 8.1%
- Hyphomicrobiales 7.8%
- Vicinamibacterales 7.3%
- Chitinophagales 4.8%
- Chthoniobacterales 3.1%
- Gaiellales 3.0%
- everything else 56.8%
- Incertae Sedis 26.4%
- Xanthobacteraceae 4.7%
- Chitinophagaceae 4.5%
- Chthoniobacteraceae 3.0%
- Nitrosomonadaceae 2.9%
- Gemmatimonadaceae 2.7%
- Gemmataceae 2.6%
- everything else 53.3%
- Incertae Sedis 52.9%
- Candidatus Udaeobacter 2.0%
- Ellin6067 1.7%
- Bradyrhizobium 1.3%
- Acidibacter 1.3%
- Candidatus Solibacter 1.1%
- Acidiferrimicrobium 1.1%
- everything else 38.7%
- uncultured bacterium 65.3%
- metagenome 5.4%
- uncultured Acidobacteria bacterium 2.9%
- uncultured Alphaproteobacteria bacterium 1.2%
- uncultured Verrucomicrobia bacterium 0.9%
- uncultured Comamonadaceae bacterium 0.9%
- uncultured soil bacterium 0.9%
- everything else 22.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.