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SAMD00160749
microbial community in surface soil collected at M-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
21,728
Reads
1,046
Observed features
6.6
Shannon
0.949
Evenness
1,046
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194929
Per-run QC
- 16S identity
- 82.3%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 213 (1.0%)
- ASV_33334 · Rhizobacter 132 (0.6%)
- ASV_34773 · Incertae Sedis 152 (0.7%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.5%
- Archaea 0.5%
- Pseudomonadota 29.0%
- Acidobacteriota 18.2%
- Actinomycetota 13.7%
- Bacteroidota 7.8%
- Planctomycetota 7.7%
- Chloroflexota 5.1%
- Verrucomicrobiota 4.5%
- everything else 14.1%
- Alphaproteobacteria 14.7%
- Gammaproteobacteria 14.3%
- Vicinamibacteria 11.5%
- Bacteroidia 7.8%
- Planctomycetes 6.4%
- Actinobacteria 5.6%
- Thermoleophilia 5.5%
- everything else 34.2%
- Vicinamibacterales 10.6%
- Burkholderiales 9.8%
- Hyphomicrobiales 9.6%
- Incertae Sedis 9.2%
- Chitinophagales 5.3%
- Gaiellales 3.1%
- Gemmatales 3.1%
- everything else 49.3%
- Incertae Sedis 28.5%
- Xanthobacteraceae 5.8%
- Chitinophagaceae 5.0%
- Nitrosomonadaceae 3.5%
- Gemmataceae 3.1%
- Comamonadaceae 2.8%
- Chthoniobacteraceae 2.7%
- everything else 48.7%
- Incertae Sedis 55.3%
- Bradyrhizobium 2.0%
- Ellin6067 1.9%
- Candidatus Udaeobacter 1.8%
- Acidibacter 1.3%
- Rhizobacter 1.1%
- Ferruginibacter 1.0%
- everything else 35.5%
- uncultured bacterium 63.2%
- metagenome 5.3%
- uncultured Acidobacteria bacterium 4.9%
- uncultured soil bacterium 1.4%
- Bradyrhizobium elkanii 1.3%
- uncultured Comamonadaceae bacterium 1.2%
- uncultured Verrucomicrobia bacterium 1.0%
- everything else 21.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 96% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.