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SAMD00160713
microbial community in surface soil collected at I-2 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
24,184
Reads
1,142
Observed features
6.662
Shannon
0.946
Evenness
1,142
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194894
Per-run QC
- 16S identity
- 82.8%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.2%
Most abundant features
- ASV_1 · Bradyrhizobium 186 (0.8%)
- ASV_33334 · Rhizobacter 127 (0.5%)
- ASV_34773 · Incertae Sedis 102 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 28.6%
- Acidobacteriota 16.3%
- Actinomycetota 15.3%
- Bacteroidota 7.2%
- Planctomycetota 6.9%
- Chloroflexota 5.2%
- Verrucomicrobiota 4.7%
- everything else 15.8%
- Alphaproteobacteria 14.3%
- Gammaproteobacteria 14.3%
- Vicinamibacteria 8.3%
- Bacteroidia 7.2%
- Actinobacteria 6.6%
- Planctomycetes 5.8%
- Thermoleophilia 5.7%
- everything else 37.9%
- Burkholderiales 9.8%
- Hyphomicrobiales 9.0%
- Vicinamibacterales 7.9%
- Incertae Sedis 7.0%
- Chitinophagales 5.7%
- Chthoniobacterales 3.7%
- Gaiellales 3.3%
- everything else 53.6%
- Incertae Sedis 24.6%
- Chitinophagaceae 5.4%
- Xanthobacteraceae 5.3%
- Chthoniobacteraceae 3.5%
- Comamonadaceae 3.4%
- Gemmatimonadaceae 3.1%
- Gemmataceae 2.5%
- everything else 52.3%
- Incertae Sedis 48.5%
- Candidatus Udaeobacter 2.5%
- Sphingomonas 1.9%
- Bradyrhizobium 1.8%
- Ellin6067 1.7%
- Ferruginibacter 1.6%
- Gemmatimonas 1.5%
- everything else 40.7%
- uncultured bacterium 65.5%
- metagenome 5.2%
- uncultured Acidobacteria bacterium 3.0%
- uncultured soil bacterium 1.4%
- Bradyrhizobium elkanii 1.3%
- uncultured actinobacterium 1.2%
- uncultured Comamonadaceae bacterium 1.1%
- everything else 21.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 94% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 92% similar (genus)
- shared: 0-5 cm, Illumina MiSeq
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.