opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160729
microbial community in rhizosphere soil collected at I-4 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
25,153
Reads
1,294
Observed features
6.756
Shannon
0.943
Evenness
1,294
Chao1
Where and when
- Collected
- 2014-06-28
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194910
Per-run QC
- 16S identity
- 80.3%
- Q30
- 91.9%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.2%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 185 (0.7%)
- ASV_33334 · Rhizobacter 111 (0.4%)
- ASV_34773 · Incertae Sedis 148 (0.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.6%
- Archaea 0.4%
- Pseudomonadota 26.8%
- Actinomycetota 16.6%
- Acidobacteriota 15.0%
- Bacteroidota 7.2%
- Planctomycetota 6.8%
- Chloroflexota 6.7%
- Myxococcota 4.8%
- everything else 15.9%
- Alphaproteobacteria 14.6%
- Gammaproteobacteria 12.3%
- Actinobacteria 8.7%
- Bacteroidia 7.2%
- Vicinamibacteria 6.5%
- Acidobacteriae 5.4%
- Planctomycetes 5.4%
- everything else 40.0%
- Hyphomicrobiales 9.5%
- Burkholderiales 9.1%
- Incertae Sedis 7.2%
- Vicinamibacterales 6.3%
- Chitinophagales 5.1%
- Micrococcales 3.1%
- Chthoniobacterales 3.0%
- everything else 56.7%
- Incertae Sedis 23.8%
- Xanthobacteraceae 5.9%
- Chitinophagaceae 4.7%
- Comamonadaceae 3.1%
- Chthoniobacteraceae 2.9%
- Gemmatimonadaceae 2.7%
- Nitrosomonadaceae 2.6%
- everything else 54.2%
- Incertae Sedis 49.6%
- Bradyrhizobium 2.0%
- Candidatus Udaeobacter 1.6%
- Ellin6067 1.5%
- Ferruginibacter 1.4%
- Chthoniobacter 1.3%
- Gemmatimonas 1.3%
- everything else 41.4%
- uncultured bacterium 62.9%
- metagenome 5.7%
- uncultured Acidobacteria bacterium 2.5%
- Bradyrhizobium elkanii 1.5%
- uncultured Verrucomicrobia bacterium 1.4%
- uncultured Alphaproteobacteria bacterium 1.4%
- uncultured Comamonadaceae bacterium 1.1%
- everything else 23.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.