opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160731
microbial community in surface soil collected at N-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
28,696
Reads
1,498
Observed features
6.886
Shannon
0.942
Evenness
1,498
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194912
Per-run QC
- 16S identity
- 84.7%
- Q30
- 92.0%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 260 (0.9%)
- ASV_33334 · Rhizobacter 152 (0.5%)
- ASV_34773 · Incertae Sedis 140 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.8%
- Archaea 0.2%
- Pseudomonadota 28.3%
- Acidobacteriota 22.3%
- Actinomycetota 10.0%
- Planctomycetota 5.9%
- Bacteroidota 5.4%
- Chloroflexota 4.9%
- Myxococcota 4.6%
- everything else 18.6%
- Gammaproteobacteria 16.9%
- Vicinamibacteria 12.1%
- Alphaproteobacteria 11.4%
- Acidobacteriae 6.3%
- Bacteroidia 5.4%
- Incertae Sedis 4.8%
- Thermoleophilia 4.4%
- everything else 38.7%
- Incertae Sedis 11.9%
- Burkholderiales 11.2%
- Vicinamibacterales 10.7%
- Hyphomicrobiales 6.5%
- Chitinophagales 3.8%
- Gaiellales 3.3%
- Terriglobales 3.0%
- everything else 49.6%
- Incertae Sedis 36.7%
- Nitrosomonadaceae 4.5%
- Xanthobacteraceae 4.5%
- Chitinophagaceae 3.3%
- SC-I-84 2.8%
- Gemmatimonadaceae 2.4%
- Gemmataceae 2.1%
- everything else 43.8%
- Incertae Sedis 63.5%
- Ellin6067 2.1%
- Bradyrhizobium 1.6%
- Candidatus Udaeobacter 1.5%
- mle1-7 1.4%
- Acidibacter 1.4%
- Bryobacter 1.1%
- everything else 27.4%
- uncultured bacterium 67.7%
- uncultured Acidobacteria bacterium 6.1%
- metagenome 3.8%
- uncultured proteobacterium 1.3%
- Bradyrhizobium elkanii 1.2%
- uncultured soil bacterium 1.1%
- uncultured beta proteobacterium 1.0%
- everything else 17.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.