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SAMD00160734
microbial community in rhizosphere soil collected at N-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
31,610
Reads
1,566
Observed features
6.92
Shannon
0.941
Evenness
1,566
Chao1
Where and when
- Collected
- 2014-06-25
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194915
Per-run QC
- 16S identity
- 84.8%
- Q30
- 92.1%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.9%
- Archaea 0.1%
- Pseudomonadota 31.6%
- Acidobacteriota 18.4%
- Actinomycetota 11.5%
- Planctomycetota 10.2%
- Bacteroidota 7.2%
- Verrucomicrobiota 4.9%
- Myxococcota 4.4%
- everything else 11.9%
- Gammaproteobacteria 17.2%
- Alphaproteobacteria 14.4%
- Vicinamibacteria 9.7%
- Planctomycetes 8.2%
- Bacteroidia 7.2%
- Acidobacteriae 5.9%
- Thermoleophilia 4.9%
- everything else 32.5%
- Burkholderiales 10.6%
- Vicinamibacterales 8.8%
- Hyphomicrobiales 8.8%
- Incertae Sedis 7.4%
- Chitinophagales 4.9%
- Gemmatales 3.8%
- Gaiellales 3.5%
- everything else 52.2%
- Incertae Sedis 28.8%
- Xanthobacteraceae 5.8%
- Chitinophagaceae 4.5%
- Gemmataceae 3.8%
- Nitrosomonadaceae 3.4%
- SC-I-84 2.8%
- Chthoniobacteraceae 2.6%
- everything else 48.3%
- Incertae Sedis 57.0%
- Bradyrhizobium 2.1%
- Ellin6067 2.1%
- Candidatus Udaeobacter 2.0%
- Acidibacter 1.6%
- Puia 1.1%
- Rhizobacter 1.1%
- everything else 33.0%
- uncultured bacterium 65.4%
- uncultured Acidobacteria bacterium 4.7%
- metagenome 3.8%
- uncultured proteobacterium 1.4%
- Bradyrhizobium elkanii 1.4%
- uncultured planctomycete 1.0%
- uncultured Comamonadaceae bacterium 0.8%
- everything else 21.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 97% similar (genus)
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 95% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.