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SAMD00160742
microbial community in surface soil collected at M-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
23,509
Reads
1,220
Observed features
6.663
Shannon
0.938
Evenness
1,220
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194923
Per-run QC
- 16S identity
- 83.3%
- Q30
- 92.7%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 184 (0.8%)
- ASV_34773 · Incertae Sedis 114 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.4%
- Archaea 1.6%
- Pseudomonadota 31.2%
- Actinomycetota 17.0%
- Acidobacteriota 15.3%
- Planctomycetota 8.9%
- Bacteroidota 5.9%
- Chloroflexota 4.8%
- Myxococcota 4.3%
- everything else 12.7%
- Alphaproteobacteria 16.4%
- Gammaproteobacteria 14.7%
- Vicinamibacteria 11.1%
- Actinobacteria 8.8%
- Planctomycetes 6.9%
- Bacteroidia 5.9%
- Thermoleophilia 5.4%
- everything else 30.7%
- Vicinamibacterales 10.2%
- Hyphomicrobiales 9.1%
- Burkholderiales 6.7%
- Incertae Sedis 6.7%
- Solirubrobacterales 3.4%
- Chitinophagales 3.3%
- Pirellulales 2.8%
- everything else 57.9%
- Incertae Sedis 21.2%
- Vicinamibacteraceae 4.5%
- Xanthobacteraceae 3.4%
- Chitinophagaceae 3.0%
- Nitrosomonadaceae 2.9%
- Pirellulaceae 2.8%
- Gemmataceae 2.5%
- everything else 59.7%
- Incertae Sedis 52.7%
- Acidibacter 2.2%
- Nocardioides 1.6%
- Streptomyces 1.4%
- Dongia 1.3%
- Ellin6067 1.1%
- Pedomicrobium 1.1%
- everything else 38.6%
- uncultured bacterium 65.3%
- metagenome 7.2%
- uncultured Acidobacteria bacterium 3.2%
- uncultured archaeon 1.4%
- uncultured soil bacterium 1.3%
- uncultured Bacteroidetes bacterium 1.0%
- uncultured Alphaproteobacteria bacterium 0.9%
- everything else 19.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 90% similar (genus)
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.