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SAMD00160743
microbial community in surface soil collected at M-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- 0-5 cm
- surface
derived from this sample's metadata and per-run QC
22,787
Reads
1,231
Observed features
6.656
Shannon
0.935
Evenness
1,231
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- 0-5 cm
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194924
Per-run QC
- 16S identity
- 83.9%
- Q30
- 92.6%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 99.0%
- Archaea 1.1%
- Pseudomonadota 30.3%
- Actinomycetota 17.7%
- Acidobacteriota 16.4%
- Planctomycetota 8.1%
- Bacteroidota 5.9%
- Chloroflexota 4.6%
- Myxococcota 3.6%
- everything else 13.3%
- Alphaproteobacteria 17.1%
- Gammaproteobacteria 13.2%
- Vicinamibacteria 12.2%
- Actinobacteria 9.2%
- Planctomycetes 6.5%
- Bacteroidia 5.9%
- Thermoleophilia 5.8%
- everything else 30.1%
- Vicinamibacterales 11.4%
- Hyphomicrobiales 9.9%
- Burkholderiales 5.8%
- Incertae Sedis 5.5%
- Solirubrobacterales 4.0%
- Chitinophagales 3.5%
- Micromonosporales 2.5%
- everything else 57.5%
- Incertae Sedis 19.5%
- Vicinamibacteraceae 5.7%
- Xanthobacteraceae 4.6%
- Chitinophagaceae 3.2%
- Micromonosporaceae 2.5%
- Gemmataceae 2.5%
- Pirellulaceae 2.5%
- everything else 59.6%
- Incertae Sedis 51.3%
- Acidibacter 1.6%
- Bradyrhizobium 1.5%
- Dongia 1.5%
- Streptomyces 1.5%
- Solirubrobacter 1.5%
- Ellin6067 1.1%
- everything else 40.0%
- uncultured bacterium 63.8%
- metagenome 5.8%
- uncultured Acidobacteria bacterium 3.3%
- uncultured soil bacterium 1.4%
- Bradyrhizobium elkanii 1.4%
- uncultured Alphaproteobacteria bacterium 1.1%
- Streptomyces sp. 1.1%
- everything else 22.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: 0-5 cm, Illumina MiSeq
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.