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SAMD00160746
microbial community in rhizosphere soil collected at M-1 ID2
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
26,438
Reads
1,350
Observed features
6.744
Shannon
0.936
Evenness
1,350
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194926
Per-run QC
- 16S identity
- 82.1%
- Q30
- 92.4%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 192 (0.7%)
- ASV_34773 · Incertae Sedis 122 (0.5%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.6%
- Archaea 1.4%
- Pseudomonadota 30.2%
- Acidobacteriota 17.7%
- Actinomycetota 15.7%
- Planctomycetota 7.4%
- Bacteroidota 6.8%
- Chloroflexota 4.6%
- Myxococcota 3.7%
- everything else 14.0%
- Gammaproteobacteria 15.2%
- Alphaproteobacteria 15.1%
- Vicinamibacteria 13.3%
- Actinobacteria 7.1%
- Bacteroidia 6.8%
- Thermoleophilia 5.7%
- Planctomycetes 5.7%
- everything else 31.3%
- Vicinamibacterales 12.3%
- Hyphomicrobiales 8.4%
- Incertae Sedis 7.4%
- Burkholderiales 7.3%
- Chitinophagales 4.1%
- Solirubrobacterales 3.4%
- Gemmatimonadales 3.0%
- everything else 54.1%
- Incertae Sedis 23.3%
- Vicinamibacteraceae 5.8%
- Chitinophagaceae 3.7%
- Nitrosomonadaceae 3.6%
- Xanthobacteraceae 3.6%
- Gemmatimonadaceae 3.0%
- Gemmataceae 2.3%
- everything else 54.8%
- Incertae Sedis 54.5%
- Acidibacter 2.1%
- Ellin6067 1.9%
- Terrimonas 1.6%
- Solirubrobacter 1.3%
- Streptomyces 1.3%
- Dongia 1.3%
- everything else 36.0%
- uncultured bacterium 65.5%
- metagenome 6.0%
- uncultured Acidobacteria bacterium 3.6%
- uncultured soil bacterium 1.4%
- uncultured archaeon 1.3%
- uncultured Bacteroidetes bacterium 1.2%
- uncultured proteobacterium 1.0%
- everything else 20.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 90% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.