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SAMD00160747
microbial community in rhizosphere soil collected at M-1 ID3
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
24,668
Reads
1,208
Observed features
6.603
Shannon
0.93
Evenness
1,208
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194927
Per-run QC
- 16S identity
- 82.7%
- Q30
- 92.6%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.6%
- Archaea 1.4%
- Pseudomonadota 32.2%
- Acidobacteriota 17.5%
- Actinomycetota 13.7%
- Bacteroidota 7.6%
- Planctomycetota 6.6%
- Chloroflexota 3.8%
- Myxococcota 3.7%
- everything else 14.9%
- Gammaproteobacteria 17.2%
- Alphaproteobacteria 15.0%
- Vicinamibacteria 12.9%
- Bacteroidia 7.6%
- Actinobacteria 7.0%
- Planctomycetes 5.0%
- Thermoleophilia 4.4%
- everything else 30.9%
- Vicinamibacterales 12.2%
- Hyphomicrobiales 7.6%
- Burkholderiales 7.4%
- Incertae Sedis 7.0%
- Chitinophagales 5.1%
- Gemmatimonadales 3.3%
- Gammaproteobacteria Incertae Sedis 2.8%
- everything else 54.6%
- Incertae Sedis 21.8%
- Vicinamibacteraceae 5.9%
- Chitinophagaceae 4.8%
- Nitrosomonadaceae 3.4%
- Gemmatimonadaceae 3.3%
- Xanthobacteraceae 3.3%
- Unknown Family 2.8%
- everything else 54.7%
- Incertae Sedis 53.3%
- Acidibacter 2.8%
- Ellin6067 1.9%
- Terrimonas 1.8%
- Dongia 1.8%
- Streptomyces 1.2%
- Mycobacterium 1.1%
- everything else 36.2%
- uncultured bacterium 63.6%
- metagenome 6.6%
- uncultured Acidobacteria bacterium 3.4%
- uncultured proteobacterium 1.3%
- uncultured archaeon 1.2%
- uncultured beta proteobacterium 1.2%
- uncultured soil bacterium 1.1%
- everything else 21.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 96% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.