opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMD00160745
microbial community in rhizosphere soil collected at M-1 ID1
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
- missing
- rhizosphere
derived from this sample's metadata and per-run QC
24,910
Reads
1,237
Observed features
6.653
Shannon
0.934
Evenness
1,237
Chao1
Where and when
- Collected
- 2014-07-19
- Depth
- missing
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
DRR194925
Per-run QC
- 16S identity
- 81.7%
- Q30
- 92.5%
- Region
- V4
- Read length
- 151 bp
- PhiX
- 0.1%
- Adapter (worst)
- 0.1%
Most abundant features
- ASV_1 · Bradyrhizobium 167 (0.7%)
- ASV_34773 · Incertae Sedis 106 (0.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 98.2%
- Archaea 1.8%
- Pseudomonadota 24.6%
- Acidobacteriota 24.1%
- Actinomycetota 14.8%
- Planctomycetota 9.3%
- Chloroflexota 5.5%
- Bacteroidota 4.7%
- Myxococcota 3.1%
- everything else 13.9%
- Vicinamibacteria 18.7%
- Alphaproteobacteria 13.1%
- Gammaproteobacteria 11.5%
- Planctomycetes 7.0%
- Actinobacteria 6.7%
- Thermoleophilia 5.7%
- Bacteroidia 4.7%
- everything else 32.6%
- Vicinamibacterales 17.5%
- Incertae Sedis 7.5%
- Hyphomicrobiales 7.4%
- Burkholderiales 5.1%
- Solirubrobacterales 3.4%
- Gemmatales 2.9%
- Chitinophagales 2.7%
- everything else 53.4%
- Incertae Sedis 26.7%
- Vicinamibacteraceae 8.4%
- Xanthobacteraceae 3.1%
- Gemmataceae 2.9%
- Pirellulaceae 2.5%
- Chitinophagaceae 2.4%
- Nitrosomonadaceae 2.3%
- everything else 51.6%
- Incertae Sedis 59.5%
- Acidibacter 1.8%
- Solirubrobacter 1.4%
- Chthoniobacter 1.1%
- Ellin6067 1.0%
- Dongia 1.0%
- Pirellula 1.0%
- everything else 33.2%
- uncultured bacterium 67.3%
- metagenome 5.6%
- uncultured Acidobacteria bacterium 5.2%
- uncultured archaeon 1.6%
- uncultured soil bacterium 1.5%
- uncultured beta proteobacterium 0.8%
- uncultured Rhodospirillaceae bacterium 0.8%
- everything else 17.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species.
Similar samples
genus composition and metadata- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJDB7978-20260926/.