opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980914
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
38,710
Reads
150
Observed features
4.023
Shannon
0.803
Evenness
150
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938165
Per-run QC
- 16S identity
- 99.1%
- Q30
- 90.5%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 78.6%
- Thermodesulfobacteriota 9.1%
- Bacillota 6.9%
- Bacteroidota 4.1%
- Actinomycetota 1.1%
- Cyanobacteriota 0.2%
- Campylobacterota 0.1%
- Gammaproteobacteria 77.9%
- Desulfuromonadia 9.1%
- Clostridia 4.9%
- Bacteroidia 4.1%
- Bacilli 1.3%
- Coriobacteriia 1.0%
- Desulfitobacteriia 0.6%
- everything else 1.2%
- Pseudomonadales 56.9%
- Burkholderiales 19.7%
- Desulfuromonadales 9.1%
- Eubacteriales 3.7%
- Flavobacteriales 3.7%
- Erysipelotrichales 1.2%
- Peptostreptococcales-Tissierellales 1.0%
- everything else 4.7%
- Pseudomonadaceae 56.4%
- Comamonadaceae 14.4%
- Desulfuromonadaceae 9.1%
- Rhodocyclaceae 5.1%
- Eubacteriaceae 3.7%
- Flavobacteriaceae 3.7%
- Incertae Sedis 1.7%
- everything else 5.8%
- Pseudomonas 56.4%
- Incertae Sedis 10.3%
- Rhodoferax 8.3%
- Desulfuromonas 5.3%
- Acetobacterium 3.7%
- Hydrogenophaga 3.5%
- Maritimimonas 2.4%
- everything else 10.2%
- uncultured bacterium 43.7%
- Pseudomonas sp. SMX344 20.6%
- Acinetobacter sp. 9.1%
- Pseudomonas oleovorans 8.8%
- Pseudomonas stutzeri 7.3%
- Pseudomonas sp. 1.8%
- Pseudomonas indoloxydans 1.5%
- everything else 7.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.