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SAMEA103980916
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
64,525
Reads
275
Observed features
5.257
Shannon
0.936
Evenness
275
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938167
Per-run QC
- 16S identity
- 98.5%
- Q30
- 95.2%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 84.8%
- Thermodesulfobacteriota 7.6%
- Bacteroidota 3.8%
- Cyanobacteriota 2.0%
- Bacillota 1.2%
- Actinomycetota 0.7%
- Campylobacterota 0.0%
- Gammaproteobacteria 84.0%
- Desulfuromonadia 7.6%
- Bacteroidia 3.8%
- Cyanobacteriia 1.6%
- Alphaproteobacteria 0.8%
- Desulfitobacteriia 0.7%
- Clostridia 0.4%
- everything else 1.1%
- Pseudomonadales 55.2%
- Burkholderiales 25.9%
- Desulfuromonadales 7.6%
- Flavobacteriales 3.3%
- Chloroplast 1.6%
- Lysobacterales 1.2%
- Enterobacterales 0.8%
- everything else 4.4%
- Pseudomonadaceae 53.9%
- Comamonadaceae 16.0%
- Rhodocyclaceae 7.6%
- Desulfuromonadaceae 7.6%
- Flavobacteriaceae 3.3%
- Incertae Sedis 3.0%
- Hydrogenophilaceae 1.7%
- everything else 7.0%
- Pseudomonas 53.9%
- Incertae Sedis 10.1%
- Rhodoferax 9.4%
- Desulfuromonas 7.6%
- Hydrogenophaga 3.2%
- Lutibacter 2.9%
- Acidovorax 1.9%
- everything else 11.1%
- uncultured bacterium 58.5%
- Pseudomonas oleovorans 9.9%
- Pseudomonas sp. SMX344 8.9%
- Pseudomonas stutzeri 3.5%
- Acinetobacter sp. 2.8%
- Pseudomonas sp. 1.7%
- uncultured Xylophilus sp. 1.6%
- everything else 13.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 83% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.