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SAMEA103980938
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
30,892
Reads
100
Observed features
2.111
Shannon
0.458
Evenness
100
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938189
Per-run QC
- 16S identity
- 99.9%
- Q30
- 89.3%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 11,515 (37.3%)
- ASV_1112 · Lutibacter 688 (2.2%)
- ASV_4445 · Pseudomonas 8,051 (26.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 95.9%
- Bacteroidota 2.7%
- Bacillota 0.6%
- Thermodesulfobacteriota 0.3%
- Cyanobacteriota 0.2%
- Actinomycetota 0.1%
- Campylobacterota 0.0%
- everything else 0.1%
- Gammaproteobacteria 95.6%
- Bacteroidia 2.7%
- Desulfitobacteriia 0.3%
- Desulfuromonadia 0.3%
- Alphaproteobacteria 0.3%
- Clostridia 0.3%
- Sericytochromatia 0.2%
- everything else 0.3%
- Pseudomonadales 73.5%
- Burkholderiales 21.0%
- Flavobacteriales 2.6%
- Enterobacterales 0.7%
- Desulfitobacteriales 0.3%
- Halothiobacillales 0.3%
- Desulfuromonadales 0.3%
- everything else 1.3%
- Pseudomonadaceae 72.8%
- Comamonadaceae 10.2%
- Rhodocyclaceae 10.1%
- Flavobacteriaceae 2.6%
- Moraxellaceae 0.7%
- Incertae Sedis 0.6%
- Oxalobacteraceae 0.5%
- everything else 2.5%
- Pseudomonas 72.8%
- Incertae Sedis 10.5%
- Rhodoferax 7.9%
- Lutibacter 2.3%
- Hydrogenophaga 1.9%
- Acinetobacter 0.7%
- Herbaspirillum 0.5%
- everything else 3.4%
- Pseudomonas sp. SMX344 37.3%
- Pseudomonas stutzeri 26.2%
- uncultured bacterium 19.4%
- Pseudomonas sp. SRMND14A 4.0%
- Albidiferax ferrireducens 3.5%
- Acinetobacter sp. 2.9%
- Hydrogenophaga sp. QZS2_3 1.1%
- everything else 5.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.