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SAMEA103980939
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
27,446
Reads
83
Observed features
2.345
Shannon
0.531
Evenness
83
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938190
Per-run QC
- 16S identity
- 99.9%
- Q30
- 91.1%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 7,419 (27.0%)
- ASV_1112 · Lutibacter 1,271 (4.6%)
- ASV_4445 · Pseudomonas 5,228 (19.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 90.7%
- Bacteroidota 5.4%
- Thermodesulfobacteriota 2.2%
- Bacillota 1.3%
- Cyanobacteriota 0.2%
- Actinomycetota 0.2%
- Acidobacteriota 0.1%
- Gammaproteobacteria 90.5%
- Bacteroidia 5.4%
- Desulfuromonadia 2.2%
- Desulfitobacteriia 0.9%
- Alphaproteobacteria 0.2%
- Clostridia 0.2%
- Actinobacteria 0.1%
- everything else 0.4%
- Pseudomonadales 57.3%
- Burkholderiales 31.3%
- Flavobacteriales 5.3%
- Desulfuromonadales 2.2%
- Enterobacterales 1.3%
- Desulfitobacteriales 0.9%
- Halothiobacillales 0.7%
- everything else 1.1%
- Pseudomonadaceae 56.8%
- Rhodocyclaceae 19.2%
- Comamonadaceae 11.3%
- Flavobacteriaceae 5.3%
- Desulfuromonadaceae 2.2%
- Incertae Sedis 1.1%
- Shewanellaceae 0.8%
- everything else 3.4%
- Pseudomonas 56.8%
- Incertae Sedis 19.5%
- Rhodoferax 10.1%
- Lutibacter 4.6%
- Desulfuromonas 2.2%
- TC1 0.9%
- Hydrogenophaga 0.8%
- everything else 5.1%
- uncultured bacterium 37.5%
- Pseudomonas sp. SMX344 27.6%
- Pseudomonas stutzeri 20.8%
- Pseudomonas sp. SRMND14A 3.3%
- Pseudomonas sp. 2.6%
- Acinetobacter sp. 1.6%
- Albidiferax ferrireducens 1.2%
- everything else 5.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.