opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980955
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
14,340
Reads
90
Observed features
3.67
Shannon
0.816
Evenness
90
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938206
Per-run QC
- 16S identity
- 99.0%
- Q30
- 90.1%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 86.6%
- Bacteroidota 4.7%
- Bacillota 4.1%
- Verrucomicrobiota 1.5%
- Thermodesulfobacteriota 1.4%
- Cyanobacteriota 1.1%
- Actinomycetota 0.6%
- everything else 0.1%
- Gammaproteobacteria 85.8%
- Bacteroidia 4.7%
- Desulfitobacteriia 2.3%
- Verrucomicrobiia 1.5%
- Desulfuromonadia 1.3%
- Bacilli 1.3%
- Cyanobacteriia 0.8%
- everything else 2.4%
- Pseudomonadales 59.0%
- Burkholderiales 25.0%
- Flavobacteriales 4.4%
- Desulfitobacteriales 2.3%
- Enterobacterales 1.3%
- Desulfuromonadales 1.3%
- Opitutales 1.2%
- everything else 5.5%
- Pseudomonadaceae 55.3%
- Comamonadaceae 16.2%
- Rhodocyclaceae 7.2%
- Flavobacteriaceae 4.4%
- Moraxellaceae 3.7%
- Incertae Sedis 3.6%
- Desulfuromonadaceae 1.3%
- everything else 8.3%
- Pseudomonas 55.3%
- Incertae Sedis 9.3%
- Acidovorax 5.5%
- Hydrogenophaga 4.7%
- Maritimimonas 3.8%
- Acinetobacter 3.6%
- TC1 2.3%
- everything else 15.5%
- uncultured bacterium 30.4%
- Pseudomonas stutzeri 17.8%
- Acinetobacter sp. 16.7%
- Pseudomonas sp. SMX344 13.5%
- uncultured beta proteobacterium 3.2%
- Pseudomonas indoloxydans 2.9%
- uncultured Xylophilus sp. 2.4%
- everything else 13.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.