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SAMEA103980934
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
29,134
Reads
112
Observed features
3.331
Shannon
0.706
Evenness
112
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938185
Per-run QC
- 16S identity
- 99.0%
- Q30
- 91.3%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 84.7%
- Bacteroidota 5.3%
- Bacillota 3.8%
- Thermodesulfobacteriota 3.1%
- Cyanobacteriota 2.5%
- Actinomycetota 0.4%
- Verrucomicrobiota 0.1%
- everything else 0.1%
- Gammaproteobacteria 82.0%
- Bacteroidia 5.3%
- Desulfuromonadia 3.0%
- Clostridia 2.8%
- Alphaproteobacteria 2.7%
- Sericytochromatia 2.5%
- Bacilli 0.8%
- everything else 1.0%
- Pseudomonadales 65.0%
- Burkholderiales 15.8%
- Flavobacteriales 4.4%
- Desulfuromonadales 3.0%
- Incertae Sedis 2.5%
- Peptostreptococcales-Tissierellales 2.1%
- Rhodobacterales 1.8%
- everything else 5.5%
- Pseudomonadaceae 58.5%
- Comamonadaceae 9.9%
- Moraxellaceae 6.3%
- Flavobacteriaceae 4.4%
- Desulfuromonadaceae 3.0%
- Incertae Sedis 2.9%
- Burkholderiaceae 2.2%
- everything else 12.8%
- Pseudomonas 58.5%
- Incertae Sedis 6.9%
- Acinetobacter 6.1%
- Rhodoferax 3.5%
- Desulfuromonas 2.9%
- Lutibacter 2.6%
- Acidovorax 2.5%
- everything else 17.0%
- uncultured bacterium 40.8%
- Pseudomonas fluvialis 19.8%
- Acinetobacter sp. 8.8%
- Pseudomonas sp. SMX344 8.2%
- Pseudomonas stutzeri 6.5%
- uncultured beta proteobacterium 2.6%
- Comamonas aquatica 2.3%
- everything else 11.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 83% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 83% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.