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SAMEA103980915
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
20,933
Reads
128
Observed features
4.569
Shannon
0.942
Evenness
128
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938166
Per-run QC
- 16S identity
- 98.9%
- Q30
- 85.1%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Pseudomonadota 88.9%
- Bacteroidota 7.1%
- Bacillota 1.2%
- Actinomycetota 0.8%
- Thermotogota 0.8%
- Chloroflexota 0.5%
- Cyanobacteriota 0.5%
- everything else 0.3%
- Gammaproteobacteria 86.7%
- Bacteroidia 7.1%
- Alphaproteobacteria 2.2%
- Desulfitobacteriia 0.9%
- Thermotogae 0.8%
- Actinobacteria 0.6%
- Anaerolineae 0.5%
- everything else 1.2%
- Pseudomonadales 69.9%
- Burkholderiales 14.7%
- Flavobacteriales 6.1%
- Sphingomonadales 1.2%
- Lysobacterales 1.0%
- Desulfitobacteriales 0.9%
- Enterobacterales 0.8%
- everything else 5.3%
- Pseudomonadaceae 69.7%
- Comamonadaceae 14.6%
- Flavobacteriaceae 6.1%
- Incertae Sedis 2.1%
- Sphingomonadaceae 1.2%
- Alteromonadaceae 0.8%
- Kosmotogaceae 0.8%
- everything else 4.7%
- Pseudomonas 69.7%
- Hydrogenophaga 6.8%
- Maritimimonas 5.3%
- Acidovorax 2.9%
- Rhodoferax 2.5%
- Comamonas 1.3%
- Incertae Sedis 1.2%
- everything else 10.3%
- uncultured bacterium 53.6%
- Pseudomonas sp. SMX344 14.8%
- Pseudomonas oleovorans 8.8%
- Pseudomonas sp. 3.5%
- Acinetobacter sp. 3.5%
- Pseudomonas stutzeri 3.3%
- uncultured beta proteobacterium 2.9%
- everything else 9.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 89% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.