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SAMEA103980922
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
16,531
Reads
78
Observed features
1.899
Shannon
0.436
Evenness
78
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938173
Per-run QC
- 16S identity
- 99.9%
- Q30
- 89.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 9,868 (59.7%)
- ASV_1112 · Lutibacter 150 (0.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.0%
- Pseudomonadota 95.8%
- Bacteroidota 3.1%
- Cyanobacteriota 0.3%
- Bacillota 0.3%
- Actinomycetota 0.2%
- Chloroflexota 0.1%
- Verrucomicrobiota 0.1%
- everything else 0.1%
- Gammaproteobacteria 95.6%
- Bacteroidia 3.1%
- Sericytochromatia 0.3%
- Alphaproteobacteria 0.3%
- Actinobacteria 0.2%
- Clostridia 0.1%
- Bacilli 0.1%
- everything else 0.3%
- Pseudomonadales 73.4%
- Burkholderiales 21.7%
- Flavobacteriales 3.0%
- Incertae Sedis 0.4%
- Enterobacterales 0.2%
- Lysobacterales 0.2%
- Micrococcales 0.2%
- everything else 1.0%
- Pseudomonadaceae 71.3%
- Comamonadaceae 11.6%
- Rhodocyclaceae 8.2%
- Flavobacteriaceae 3.0%
- Moraxellaceae 2.1%
- Methylophilaceae 1.5%
- Incertae Sedis 0.4%
- everything else 1.9%
- Pseudomonas 71.3%
- Incertae Sedis 8.8%
- Hydrogenophaga 6.7%
- Acidovorax 2.5%
- Rhodoferax 2.2%
- Acinetobacter 2.1%
- Lutibacter 1.7%
- everything else 4.8%
- Pseudomonas sp. SMX344 59.7%
- uncultured bacterium 19.1%
- Pseudomonas sp. 5.5%
- Pseudomonas stutzeri 3.4%
- uncultured Acinetobacter sp. 2.1%
- Hydrogenophaga taeniospiralis 2.1%
- uncultured beta proteobacterium 1.9%
- everything else 6.3%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.