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SAMEA103980929
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
31,672
Reads
165
Observed features
3.137
Shannon
0.614
Evenness
165
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938180
Per-run QC
- 16S identity
- 99.3%
- Q30
- 90.9%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 87.7%
- Bacteroidota 11.3%
- Bacillota 0.5%
- Campylobacterota 0.2%
- Actinomycetota 0.1%
- Bdellovibrionota 0.1%
- Thermodesulfobacteriota 0.1%
- Gammaproteobacteria 87.0%
- Bacteroidia 11.3%
- Alphaproteobacteria 0.7%
- Desulfitobacteriia 0.3%
- Campylobacteria 0.2%
- Actinobacteria 0.1%
- Clostridia 0.1%
- everything else 0.3%
- Pseudomonadales 62.5%
- Burkholderiales 17.8%
- Flavobacteriales 10.4%
- Halothiobacillales 5.6%
- Enterobacterales 0.9%
- Bacteroidales 0.4%
- Cytophagales 0.4%
- everything else 1.8%
- Pseudomonadaceae 61.7%
- Comamonadaceae 12.3%
- Flavobacteriaceae 10.4%
- Halothiobacillaceae 5.6%
- Rhodocyclaceae 2.3%
- Alcaligenaceae 0.9%
- Oxalobacteraceae 0.7%
- everything else 6.0%
- Pseudomonas 61.7%
- Maritimimonas 5.7%
- Thiovirga 5.6%
- Lutibacter 4.0%
- Rhodoferax 3.3%
- Acidovorax 3.3%
- Comamonas 3.3%
- everything else 13.1%
- Acinetobacter sp. 25.5%
- uncultured bacterium 21.5%
- Pseudomonas sp. SMX344 17.3%
- uncultured Thiovirga sp. 5.6%
- Pseudomonas indoloxydans 5.5%
- Comamonas aquatica 3.3%
- uncultured Flavobacterium sp. 2.9%
- everything else 18.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 87% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.