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SAMEA103980930
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
10,763
Reads
89
Observed features
3.543
Shannon
0.789
Evenness
89
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938181
Per-run QC
- 16S identity
- 99.4%
- Q30
- 91.2%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 91.9%
- Bacteroidota 7.8%
- Actinomycetota 0.1%
- Campylobacterota 0.1%
- Thermodesulfobacteriota 0.1%
- Bacillota 0.0%
- Chloroflexota 0.0%
- Gammaproteobacteria 91.8%
- Bacteroidia 7.8%
- Alphaproteobacteria 0.1%
- Actinobacteria 0.1%
- Campylobacteria 0.1%
- Clostridia 0.0%
- Desulfovibrionia 0.0%
- Pseudomonadales 73.7%
- Burkholderiales 13.1%
- Flavobacteriales 7.4%
- Halothiobacillales 4.3%
- Enterobacterales 0.6%
- Cytophagales 0.2%
- Bacteroidales 0.1%
- everything else 0.5%
- Pseudomonadaceae 73.3%
- Flavobacteriaceae 7.4%
- Comamonadaceae 6.3%
- Halothiobacillaceae 4.3%
- Hydrogenophilaceae 2.8%
- Rhodocyclaceae 1.9%
- Oxalobacteraceae 1.3%
- everything else 2.6%
- Pseudomonas 73.3%
- Thiovirga 4.3%
- Lutibacter 4.1%
- Maritimimonas 3.3%
- Rhodoferax 3.0%
- Thiobacillus 2.8%
- Comamonas 1.9%
- everything else 7.2%
- Acinetobacter sp. 30.9%
- uncultured bacterium 23.2%
- Pseudomonas sp. SMX344 20.4%
- uncultured Thiovirga sp. 4.3%
- Pseudomonas indoloxydans 4.3%
- uncultured Flavobacterium sp. 3.2%
- Pseudomonas oleovorans 1.9%
- everything else 11.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 87% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 87% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.