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SAMEA103980933
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
30,291
Reads
207
Observed features
4.827
Shannon
0.905
Evenness
207
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938184
Per-run QC
- 16S identity
- 99.1%
- Q30
- 92.6%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 89.3%
- Bacteroidota 8.2%
- Bacillota 1.0%
- Cyanobacteriota 0.7%
- Campylobacterota 0.4%
- Bdellovibrionota 0.1%
- Actinomycetota 0.1%
- everything else 0.1%
- Gammaproteobacteria 88.1%
- Bacteroidia 8.2%
- Alphaproteobacteria 1.3%
- Sericytochromatia 0.7%
- Campylobacteria 0.4%
- Clostridia 0.3%
- Bacilli 0.3%
- everything else 0.7%
- Pseudomonadales 67.8%
- Burkholderiales 14.6%
- Flavobacteriales 7.3%
- Halothiobacillales 4.3%
- Enterobacterales 1.2%
- Cytophagales 0.8%
- Incertae Sedis 0.7%
- everything else 3.2%
- Pseudomonadaceae 66.3%
- Flavobacteriaceae 7.3%
- Comamonadaceae 6.0%
- Halothiobacillaceae 4.3%
- Rhodocyclaceae 3.3%
- Burkholderiaceae 1.9%
- Moraxellaceae 1.4%
- everything else 9.3%
- Pseudomonas 66.3%
- Maritimimonas 5.4%
- Thiovirga 4.3%
- Comamonas 2.7%
- Incertae Sedis 2.5%
- Thauera 1.7%
- Lutibacter 1.6%
- everything else 15.4%
- Acinetobacter sp. 40.2%
- uncultured bacterium 29.7%
- Pseudomonas indoloxydans 5.2%
- Pseudomonas sp. SMX344 5.1%
- uncultured Thiovirga sp. 4.3%
- Comamonas aquatica 2.5%
- Pseudomonas stutzeri 1.8%
- everything else 11.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 87% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.