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SAMEA103980932
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
23,030
Reads
106
Observed features
3.07
Shannon
0.658
Evenness
106
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938183
Per-run QC
- 16S identity
- 99.3%
- Q30
- 90.8%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 86.4%
- Bacteroidota 12.1%
- Cyanobacteriota 0.6%
- Bacillota 0.4%
- Thermodesulfobacteriota 0.2%
- Actinomycetota 0.2%
- Campylobacterota 0.0%
- everything else 0.1%
- Gammaproteobacteria 85.9%
- Bacteroidia 12.1%
- Sericytochromatia 0.6%
- Alphaproteobacteria 0.5%
- Clostridia 0.2%
- Actinobacteria 0.2%
- Desulfuromonadia 0.2%
- everything else 0.3%
- Pseudomonadales 66.2%
- Burkholderiales 14.0%
- Flavobacteriales 11.1%
- Halothiobacillales 4.8%
- Enterobacterales 0.9%
- Bacteroidales 0.7%
- Incertae Sedis 0.6%
- everything else 1.7%
- Pseudomonadaceae 65.7%
- Flavobacteriaceae 11.1%
- Comamonadaceae 7.2%
- Halothiobacillaceae 4.8%
- Rhodocyclaceae 3.7%
- Alcaligenaceae 1.5%
- Incertae Sedis 0.9%
- everything else 5.1%
- Pseudomonas 65.7%
- Maritimimonas 7.2%
- Thiovirga 4.8%
- Comamonas 3.2%
- Incertae Sedis 2.8%
- Flavobacterium 2.2%
- Rhodoferax 2.1%
- everything else 12.0%
- uncultured bacterium 40.1%
- Acinetobacter sp. 19.4%
- Pseudomonas sp. SMX344 10.1%
- uncultured Thiovirga sp. 4.8%
- Pseudomonas sp. HB02 3.9%
- Pseudomonas stutzeri 3.4%
- Pseudacidovorax sp. CiN003 2.8%
- everything else 15.5%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.