opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980917
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
21,774
Reads
42
Observed features
2.07
Shannon
0.554
Evenness
42
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938168
Per-run QC
- 16S identity
- 99.9%
- Q30
- 90.2%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 1,367 (6.3%)
- ASV_1112 · Lutibacter 776 (3.6%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 94.9%
- Bacteroidota 5.0%
- Actinomycetota 0.1%
- Bacillota 0.0%
- Gemmatimonadota 0.0%
- Gammaproteobacteria 94.7%
- Bacteroidia 5.0%
- Alphaproteobacteria 0.2%
- Actinobacteria 0.1%
- Desulfitobacteriia 0.0%
- Gemmatimonadia 0.0%
- Dethiobacteria 0.0%
- Pseudomonadales 48.6%
- Burkholderiales 46.1%
- Flavobacteriales 5.0%
- Micrococcales 0.1%
- Sphingomonadales 0.1%
- Rhodobacterales 0.0%
- Enterobacterales 0.0%
- everything else 0.1%
- Pseudomonadaceae 46.4%
- Comamonadaceae 36.6%
- Hydrogenophilaceae 6.2%
- Flavobacteriaceae 5.0%
- Moraxellaceae 2.2%
- Rhodocyclaceae 2.2%
- Methylophilaceae 1.0%
- everything else 0.5%
- Pseudomonas 46.4%
- Rhodoferax 21.7%
- Hydrogenophaga 13.4%
- Thiobacillus 6.2%
- Lutibacter 4.4%
- Incertae Sedis 2.2%
- Acinetobacter 2.2%
- everything else 3.6%
- Pseudomonas stutzeri 38.5%
- uncultured bacterium 19.4%
- Albidiferax ferrireducens 15.0%
- Hydrogenophaga taeniospiralis 13.3%
- Pseudomonas sp. SMX344 6.3%
- uncultured Acinetobacter sp. 2.2%
- Pseudomonas sp. 1.2%
- everything else 4.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 71% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 70% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 69% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.