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SAMEA103980925
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
24,724
Reads
56
Observed features
1.827
Shannon
0.454
Evenness
56
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938176
Per-run QC
- 16S identity
- 99.9%
- Q30
- 91.7%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 13,564 (54.9%)
- ASV_1112 · Lutibacter 3,405 (13.8%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 85.1%
- Bacteroidota 14.4%
- Bacillota 0.4%
- Thermodesulfobacteriota 0.1%
- Actinomycetota 0.1%
- Gammaproteobacteria 81.5%
- Bacteroidia 14.4%
- Alphaproteobacteria 3.6%
- Desulfitobacteriia 0.2%
- Clostridia 0.1%
- Desulfuromonadia 0.1%
- Actinobacteria 0.1%
- Pseudomonadales 60.1%
- Burkholderiales 20.5%
- Flavobacteriales 14.1%
- Sphingomonadales 3.1%
- Enterobacterales 0.9%
- Rhodobacterales 0.4%
- Desulfitobacteriales 0.2%
- everything else 0.6%
- Pseudomonadaceae 56.5%
- Comamonadaceae 17.0%
- Flavobacteriaceae 14.1%
- Moraxellaceae 3.5%
- Sphingomonadaceae 3.1%
- Oxalobacteraceae 2.5%
- Alteromonadaceae 0.9%
- everything else 2.4%
- Pseudomonas 56.5%
- Lutibacter 14.1%
- Rhodoferax 11.1%
- Acidovorax 4.7%
- Acinetobacter 3.5%
- Novosphingobium 1.6%
- Incertae Sedis 1.5%
- everything else 6.9%
- Pseudomonas sp. SMX344 54.9%
- uncultured bacterium 22.0%
- Albidiferax ferrireducens 8.8%
- iron-reducing bacterium enrichment culture clone FEA_2_G5 4.5%
- uncultured Acinetobacter sp. 2.3%
- Squalius pyrenaicus 1.3%
- Sphingopyxis sp. TMB2-10 1.1%
- everything else 5.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 80% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 78% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 77% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.