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SAMEA103980924
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
14,284
Reads
48
Observed features
2.054
Shannon
0.531
Evenness
48
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938175
Per-run QC
- 16S identity
- 99.9%
- Q30
- 89.8%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 6,338 (44.4%)
- ASV_1112 · Lutibacter 2,670 (18.7%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 80.0%
- Bacteroidota 19.5%
- Bacillota 0.4%
- Thermodesulfobacteriota 0.1%
- Actinomycetota 0.1%
- Gammaproteobacteria 74.6%
- Bacteroidia 19.5%
- Alphaproteobacteria 5.4%
- Desulfitobacteriia 0.2%
- Clostridia 0.2%
- Desulfuromonadia 0.1%
- Actinobacteria 0.1%
- Pseudomonadales 51.1%
- Burkholderiales 22.7%
- Flavobacteriales 19.2%
- Sphingomonadales 4.4%
- Rhodobacterales 0.9%
- Enterobacterales 0.8%
- Bacteroidales 0.3%
- everything else 0.6%
- Pseudomonadaceae 46.1%
- Flavobacteriaceae 19.2%
- Comamonadaceae 19.0%
- Moraxellaceae 4.9%
- Sphingomonadaceae 4.4%
- Oxalobacteraceae 2.7%
- Paracoccaceae 0.9%
- everything else 2.8%
- Pseudomonas 46.1%
- Lutibacter 19.2%
- Rhodoferax 12.4%
- Acidovorax 5.5%
- Acinetobacter 4.9%
- Sphingorhabdus 2.2%
- Incertae Sedis 1.8%
- everything else 8.0%
- Pseudomonas sp. SMX344 44.4%
- uncultured bacterium 28.3%
- Albidiferax ferrireducens 9.8%
- iron-reducing bacterium enrichment culture clone FEA_2_G5 5.3%
- uncultured Acinetobacter sp. 3.0%
- Sphingopyxis sp. TMB2-10 2.2%
- Squalius pyrenaicus 1.3%
- everything else 5.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 71% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 70% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 69% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.