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SAMEA103980919
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
24,145
Reads
50
Observed features
2.287
Shannon
0.584
Evenness
50
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938170
Per-run QC
- 16S identity
- 99.9%
- Q30
- 89.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 2,397 (9.9%)
- ASV_1112 · Lutibacter 997 (4.1%)
- ASV_4445 · Pseudomonas 21 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 94.1%
- Bacteroidota 5.6%
- Actinomycetota 0.2%
- Cyanobacteriota 0.1%
- Bacillota 0.1%
- Acidobacteriota 0.0%
- Gammaproteobacteria 93.8%
- Bacteroidia 5.6%
- Alphaproteobacteria 0.2%
- Actinobacteria 0.2%
- Sericytochromatia 0.1%
- Clostridia 0.0%
- Bacilli 0.0%
- Burkholderiales 49.9%
- Pseudomonadales 43.9%
- Flavobacteriales 5.6%
- Micrococcales 0.2%
- Sphingomonadales 0.1%
- Enterobacterales 0.1%
- Incertae Sedis 0.1%
- everything else 0.2%
- Pseudomonadaceae 40.1%
- Comamonadaceae 39.8%
- Hydrogenophilaceae 6.3%
- Flavobacteriaceae 5.6%
- Moraxellaceae 3.8%
- Rhodocyclaceae 2.7%
- Methylophilaceae 1.0%
- everything else 0.8%
- Pseudomonas 40.1%
- Rhodoferax 19.0%
- Hydrogenophaga 18.7%
- Thiobacillus 6.3%
- Lutibacter 5.0%
- Acinetobacter 3.8%
- Incertae Sedis 2.8%
- everything else 4.2%
- Pseudomonas stutzeri 27.9%
- uncultured bacterium 23.2%
- Hydrogenophaga taeniospiralis 18.6%
- Pseudomonas sp. SMX344 9.9%
- Albidiferax ferrireducens 9.9%
- uncultured Acinetobacter sp. 3.8%
- Pseudomonas sp. 1.9%
- everything else 4.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 87% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 67% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 65% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 65% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.