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SAMEA103980923
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
15,464
Reads
55
Observed features
2.005
Shannon
0.5
Evenness
55
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938174
Per-run QC
- 16S identity
- 99.9%
- Q30
- 89.1%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 7,276 (47.1%)
- ASV_1112 · Lutibacter 2,994 (19.4%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 77.9%
- Bacteroidota 21.5%
- Bacillota 0.4%
- Thermodesulfobacteriota 0.1%
- Actinomycetota 0.1%
- Gammaproteobacteria 74.6%
- Bacteroidia 21.5%
- Alphaproteobacteria 3.3%
- Clostridia 0.3%
- Desulfitobacteriia 0.2%
- Desulfuromonadia 0.1%
- Actinobacteria 0.1%
- Pseudomonadales 51.8%
- Burkholderiales 21.7%
- Flavobacteriales 21.1%
- Sphingomonadales 2.7%
- Enterobacterales 1.1%
- Rhodobacterales 0.5%
- Bacteroidales 0.4%
- everything else 0.8%
- Pseudomonadaceae 48.9%
- Flavobacteriaceae 21.1%
- Comamonadaceae 17.1%
- Oxalobacteraceae 3.4%
- Moraxellaceae 2.9%
- Sphingomonadaceae 2.7%
- Alteromonadaceae 1.0%
- everything else 3.0%
- Pseudomonas 48.9%
- Lutibacter 21.0%
- Rhodoferax 11.0%
- Acidovorax 4.7%
- Acinetobacter 2.8%
- Incertae Sedis 1.9%
- Sphingorhabdus 1.3%
- everything else 8.4%
- Pseudomonas sp. SMX344 47.0%
- uncultured bacterium 29.1%
- Albidiferax ferrireducens 7.7%
- iron-reducing bacterium enrichment culture clone FEA_2_G5 4.4%
- uncultured Acinetobacter sp. 1.9%
- uncultured Flavobacterium sp. 1.7%
- metagenome 1.6%
- everything else 6.7%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 72% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 71% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 71% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.