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SAMEA103980918
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
17,380
Reads
39
Observed features
2.389
Shannon
0.652
Evenness
39
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938169
Per-run QC
- 16S identity
- 99.9%
- Q30
- 88.0%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 1,898 (10.9%)
- ASV_1112 · Lutibacter 884 (5.1%)
- ASV_4445 · Pseudomonas 20 (0.1%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 92.4%
- Bacteroidota 7.3%
- Actinomycetota 0.2%
- Cyanobacteriota 0.1%
- Bacillota 0.1%
- Verrucomicrobiota 0.0%
- Myxococcota 0.0%
- Gammaproteobacteria 92.3%
- Bacteroidia 7.3%
- Actinobacteria 0.2%
- Alphaproteobacteria 0.1%
- Sericytochromatia 0.1%
- Bacilli 0.1%
- Verrucomicrobiia 0.0%
- Burkholderiales 60.7%
- Pseudomonadales 31.6%
- Flavobacteriales 7.3%
- Micrococcales 0.2%
- Bacteroidales 0.1%
- Sphingomonadales 0.1%
- Incertae Sedis 0.1%
- everything else 0.1%
- Comamonadaceae 46.0%
- Pseudomonadaceae 27.7%
- Hydrogenophilaceae 10.3%
- Flavobacteriaceae 7.3%
- Moraxellaceae 3.8%
- Rhodocyclaceae 3.7%
- Methylophilaceae 0.7%
- everything else 0.5%
- Pseudomonas 27.7%
- Hydrogenophaga 23.2%
- Rhodoferax 20.0%
- Thiobacillus 10.3%
- Lutibacter 6.4%
- Acinetobacter 3.8%
- Incertae Sedis 3.8%
- everything else 4.7%
- uncultured bacterium 30.6%
- Hydrogenophaga taeniospiralis 23.1%
- Pseudomonas stutzeri 14.3%
- Pseudomonas sp. SMX344 10.9%
- Albidiferax ferrireducens 9.6%
- uncultured Acinetobacter sp. 3.8%
- Pseudomonas sp. 2.2%
- everything else 5.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 87% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 56% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 53% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 53% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.