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SAMEA103980920
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
25,144
Reads
72
Observed features
2.419
Shannon
0.566
Evenness
72
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938171
Per-run QC
- 16S identity
- 99.9%
- Q30
- 91.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 8,684 (34.5%)
- ASV_1112 · Lutibacter 302 (1.2%)
- ASV_4445 · Pseudomonas 86 (0.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 93.5%
- Bacteroidota 5.6%
- Actinomycetota 0.4%
- Cyanobacteriota 0.3%
- Bacillota 0.1%
- Bdellovibrionota 0.0%
- Gemmatimonadota 0.0%
- Gammaproteobacteria 93.3%
- Bacteroidia 5.6%
- Actinobacteria 0.4%
- Sericytochromatia 0.3%
- Alphaproteobacteria 0.2%
- Bacilli 0.1%
- Clostridia 0.1%
- everything else 0.1%
- Pseudomonadales 66.0%
- Burkholderiales 27.0%
- Flavobacteriales 5.5%
- Micrococcales 0.3%
- Incertae Sedis 0.3%
- Enterobacterales 0.2%
- Halothiobacillales 0.1%
- everything else 0.5%
- Pseudomonadaceae 51.0%
- Moraxellaceae 15.0%
- Rhodocyclaceae 13.5%
- Comamonadaceae 11.1%
- Flavobacteriaceae 5.5%
- Methylophilaceae 2.0%
- Incertae Sedis 0.4%
- everything else 1.4%
- Pseudomonas 51.0%
- Acinetobacter 15.0%
- Incertae Sedis 14.0%
- Hydrogenophaga 4.7%
- Acidovorax 3.2%
- Rhodoferax 3.0%
- Maritimimonas 2.8%
- everything else 6.3%
- Pseudomonas sp. SMX344 35.1%
- uncultured bacterium 24.6%
- uncultured Acinetobacter sp. 14.7%
- Pseudomonas sp. 8.7%
- Pseudomonas stutzeri 5.0%
- Hydrogenophaga taeniospiralis 2.8%
- metagenome 2.0%
- everything else 7.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 76% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.