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SAMEA103980954
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
29,079
Reads
158
Observed features
4.146
Shannon
0.819
Evenness
158
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938205
Per-run QC
- 16S identity
- 99.1%
- Q30
- 93.3%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 85.3%
- Bacteroidota 5.7%
- Bacillota 4.1%
- Thermodesulfobacteriota 3.0%
- Actinomycetota 0.8%
- Verrucomicrobiota 0.7%
- Cyanobacteriota 0.3%
- Gammaproteobacteria 83.6%
- Bacteroidia 5.7%
- Desulfuromonadia 3.0%
- Alphaproteobacteria 1.7%
- Clostridia 1.6%
- Bacilli 1.3%
- Desulfitobacteriia 1.2%
- everything else 1.9%
- Pseudomonadales 66.3%
- Burkholderiales 15.9%
- Flavobacteriales 5.3%
- Desulfuromonadales 3.0%
- Peptostreptococcales-Tissierellales 1.4%
- Desulfitobacteriales 1.2%
- Erysipelotrichales 1.2%
- everything else 5.6%
- Pseudomonadaceae 58.4%
- Comamonadaceae 11.4%
- Moraxellaceae 8.0%
- Flavobacteriaceae 5.2%
- Rhodocyclaceae 3.6%
- Desulfuromonadaceae 3.0%
- Incertae Sedis 1.6%
- everything else 8.9%
- Pseudomonas 58.4%
- Acinetobacter 7.9%
- Incertae Sedis 5.9%
- Acidovorax 4.5%
- Maritimimonas 3.9%
- Hydrogenophaga 2.9%
- Desulfuromonas 1.6%
- everything else 15.0%
- uncultured bacterium 29.4%
- Pseudomonas sp. SMX344 18.5%
- Acinetobacter sp. 15.1%
- Pseudomonas stutzeri 12.0%
- uncultured Acinetobacter sp. 7.9%
- uncultured beta proteobacterium 2.5%
- Pseudomonas indoloxydans 2.3%
- everything else 12.4%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 90% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 89% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 82% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 80% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.