opens the authoritative record at ENA, SRA or BioSample; this page never replaces it
SAMEA103980921
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
14,642
Reads
61
Observed features
2.181
Shannon
0.531
Evenness
61
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938172
Per-run QC
- 16S identity
- 99.9%
- Q30
- 89.7%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 92.8%
- Bacteroidota 6.4%
- Bacillota 0.3%
- Cyanobacteriota 0.3%
- Actinomycetota 0.1%
- Verrucomicrobiota 0.1%
- Acidobacteriota 0.1%
- everything else 0.1%
- Gammaproteobacteria 92.6%
- Bacteroidia 6.4%
- Sericytochromatia 0.3%
- Bacilli 0.2%
- Actinobacteria 0.1%
- Alphaproteobacteria 0.1%
- Verrucomicrobiia 0.1%
- everything else 0.2%
- Pseudomonadales 64.7%
- Burkholderiales 27.5%
- Flavobacteriales 6.3%
- Incertae Sedis 0.3%
- Enterobacterales 0.2%
- Micrococcales 0.1%
- Sphingomonadales 0.1%
- everything else 0.7%
- Pseudomonadaceae 49.0%
- Moraxellaceae 15.7%
- Rhodocyclaceae 12.8%
- Comamonadaceae 11.6%
- Flavobacteriaceae 6.3%
- Methylophilaceae 2.9%
- Incertae Sedis 0.3%
- everything else 1.4%
- Pseudomonas 49.0%
- Acinetobacter 15.7%
- Incertae Sedis 13.2%
- Rhodoferax 4.1%
- Hydrogenophaga 3.4%
- Acidovorax 3.3%
- Lutibacter 3.0%
- everything else 8.3%
- Pseudomonas sp. SMX344 40.3%
- uncultured bacterium 24.2%
- uncultured Acinetobacter sp. 15.7%
- Pseudomonas sp. 6.7%
- Hydrogenophaga taeniospiralis 2.9%
- metagenome 2.9%
- iron-reducing bacterium enrichment culture clone FEA_2_G5 2.2%
- everything else 5.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 81% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 78% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 78% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
Report a field that is empty or mistaken, or associate a paper with this study. No account is needed; the contact email is optional and used only to reply about this submission.
Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.