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SAMEA103980940
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
15,037
Reads
52
Observed features
2.159
Shannon
0.546
Evenness
52
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938191
Per-run QC
- 16S identity
- 99.8%
- Q30
- 90.5%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 6,319 (42.0%)
- ASV_1112 · Lutibacter 130 (0.9%)
- ASV_4445 · Pseudomonas 739 (4.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 95.6%
- Bacteroidota 1.6%
- Cyanobacteriota 1.1%
- Bacillota 0.6%
- Acidobacteriota 0.5%
- Chloroflexota 0.3%
- Actinomycetota 0.1%
- everything else 0.1%
- Gammaproteobacteria 95.0%
- Bacteroidia 1.6%
- Sericytochromatia 1.1%
- Alphaproteobacteria 0.6%
- Blastocatellia 0.5%
- Anaerolineae 0.3%
- Clostridia 0.3%
- everything else 0.6%
- Pseudomonadales 60.6%
- Burkholderiales 27.7%
- Halothiobacillales 6.0%
- Flavobacteriales 1.6%
- Incertae Sedis 1.1%
- Enterobacterales 0.7%
- Blastocatellales 0.5%
- everything else 1.7%
- Pseudomonadaceae 59.1%
- Rhodocyclaceae 19.1%
- Comamonadaceae 7.7%
- Halothiobacillaceae 6.0%
- Flavobacteriaceae 1.6%
- Incertae Sedis 1.3%
- Moraxellaceae 1.1%
- everything else 4.1%
- Pseudomonas 59.1%
- Incertae Sedis 20.4%
- Thiovirga 6.0%
- Hydrogenophaga 3.5%
- Rhodoferax 2.2%
- Comamonas 1.9%
- Acinetobacter 1.1%
- everything else 5.8%
- Pseudomonas sp. SMX344 42.0%
- uncultured bacterium 28.0%
- Pseudomonas sp. SRMND14A 7.7%
- Pseudomonas stutzeri 7.3%
- uncultured Thiovirga sp. 6.0%
- Hydrogenophaga taeniospiralis 3.0%
- Comamonas aquatica 1.9%
- everything else 4.0%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 84% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 79% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 78% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 78% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.