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SAMEA103980956
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- present
derived from this sample's metadata and per-run QC
131,198
Reads
139
Observed features
2.428
Shannon
0.492
Evenness
139
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938207
Per-run QC
- 16S identity
- 99.0%
- Q30
- 92.8%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_2223 · Pseudomonas 44,876 (34.2%)
- ASV_3334 · Pseudomonas 32,614 (24.9%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 97.3%
- Bacteroidota 1.5%
- Actinomycetota 0.4%
- Cyanobacteriota 0.3%
- Bacillota 0.3%
- Campylobacterota 0.1%
- Acidobacteriota 0.0%
- Gammaproteobacteria 94.4%
- Alphaproteobacteria 2.9%
- Bacteroidia 1.5%
- Actinobacteria 0.4%
- Cyanobacteriia 0.3%
- Bacilli 0.2%
- Campylobacteria 0.1%
- everything else 0.2%
- Pseudomonadales 80.8%
- Burkholderiales 12.7%
- Sphingomonadales 2.5%
- Flavobacteriales 1.4%
- Halothiobacillales 0.5%
- Micrococcales 0.4%
- Enterobacterales 0.3%
- everything else 1.4%
- Pseudomonadaceae 78.1%
- Comamonadaceae 6.3%
- Hydrogenophilaceae 3.3%
- Moraxellaceae 2.7%
- Sphingomonadaceae 2.5%
- Rhodocyclaceae 2.1%
- Flavobacteriaceae 1.4%
- everything else 3.7%
- Pseudomonas 78.1%
- Thiobacillus 3.3%
- Hydrogenophaga 2.8%
- Acinetobacter 2.7%
- Incertae Sedis 2.6%
- Rhodoferax 2.5%
- Sphingobium 1.8%
- everything else 6.3%
- Pseudomonas sp. SMX344 59.1%
- uncultured bacterium 11.3%
- Pseudomonas stutzeri 10.5%
- uncultured Bacilli bacterium 6.8%
- Hydrogenophaga taeniospiralis 2.3%
- Albidiferax ferrireducens 2.2%
- Sphingobium sp. E64II 1.8%
- everything else 6.1%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 95% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.