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SAMEA103980937
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
56,614
Reads
102
Observed features
2.116
Shannon
0.458
Evenness
102
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938188
Per-run QC
- 16S identity
- 99.8%
- Q30
- 92.5%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 90.7%
- Bacteroidota 7.9%
- Thermodesulfobacteriota 0.7%
- Bacillota 0.5%
- Cyanobacteriota 0.1%
- Verrucomicrobiota 0.1%
- Actinomycetota 0.1%
- everything else 0.1%
- Gammaproteobacteria 90.6%
- Bacteroidia 7.9%
- Desulfuromonadia 0.6%
- Desulfitobacteriia 0.3%
- Clostridia 0.1%
- Sericytochromatia 0.1%
- Alphaproteobacteria 0.1%
- everything else 0.3%
- Pseudomonadales 72.0%
- Burkholderiales 17.3%
- Flavobacteriales 7.8%
- Enterobacterales 0.7%
- Desulfuromonadales 0.6%
- Halothiobacillales 0.5%
- Desulfitobacteriales 0.3%
- everything else 0.8%
- Pseudomonadaceae 71.7%
- Comamonadaceae 7.9%
- Flavobacteriaceae 7.8%
- Rhodocyclaceae 7.0%
- Hydrogenophilaceae 1.7%
- Desulfuromonadaceae 0.6%
- Halothiobacillaceae 0.5%
- everything else 2.7%
- Pseudomonas 71.7%
- Incertae Sedis 7.4%
- Lutibacter 7.2%
- Rhodoferax 6.9%
- Thiobacillus 1.7%
- Desulfuromonas 0.6%
- Thiovirga 0.5%
- everything else 3.9%
- Pseudomonas stutzeri 34.4%
- Pseudomonas sp. SMX344 28.4%
- uncultured bacterium 23.2%
- Pseudomonas sp. 3.5%
- Pseudomonas indoloxydans 3.2%
- Albidiferax ferrireducens 1.8%
- Acinetobacter sp. 1.7%
- everything else 3.8%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.