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SAMEA103980936
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
20,597
Reads
89
Observed features
2.208
Shannon
0.492
Evenness
89
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938187
Per-run QC
- 16S identity
- 99.9%
- Q30
- 91.4%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 7,264 (35.3%)
- ASV_1112 · Lutibacter 838 (4.1%)
- ASV_4445 · Pseudomonas 6,247 (30.3%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 92.5%
- Bacteroidota 4.9%
- Bacillota 1.3%
- Cyanobacteriota 0.4%
- Thermodesulfobacteriota 0.3%
- Verrucomicrobiota 0.2%
- Campylobacterota 0.1%
- everything else 0.2%
- Gammaproteobacteria 92.2%
- Bacteroidia 4.9%
- Desulfitobacteriia 0.6%
- Bacilli 0.5%
- Desulfuromonadia 0.3%
- Sericytochromatia 0.3%
- Alphaproteobacteria 0.3%
- everything else 0.8%
- Pseudomonadales 76.7%
- Burkholderiales 14.8%
- Flavobacteriales 4.7%
- Desulfitobacteriales 0.6%
- Enterobacterales 0.4%
- Desulfuromonadales 0.3%
- Incertae Sedis 0.3%
- everything else 2.2%
- Pseudomonadaceae 75.7%
- Comamonadaceae 8.8%
- Flavobacteriaceae 4.7%
- Rhodocyclaceae 4.3%
- Moraxellaceae 1.0%
- Incertae Sedis 0.9%
- Burkholderiaceae 0.7%
- everything else 3.9%
- Pseudomonas 75.7%
- Rhodoferax 6.5%
- Incertae Sedis 5.3%
- Lutibacter 4.1%
- Hydrogenophaga 1.3%
- Acinetobacter 1.0%
- Acidovorax 0.6%
- everything else 5.5%
- Pseudomonas sp. SMX344 35.3%
- Pseudomonas stutzeri 30.7%
- uncultured bacterium 15.7%
- Pseudomonas sp. SRMND14A 4.2%
- Albidiferax ferrireducens 3.6%
- Acinetobacter sp. 2.3%
- Pseudomonas fulva 1.0%
- everything else 7.2%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 93% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 88% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.