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SAMEA103980935
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
8,257
Reads
52
Observed features
2.064
Shannon
0.522
Evenness
52
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938186
Per-run QC
- 16S identity
- 99.8%
- Q30
- 90.6%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 2,489 (30.1%)
- ASV_1112 · Lutibacter 431 (5.2%)
- ASV_4445 · Pseudomonas 2,950 (35.7%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Pseudomonadota 92.1%
- Bacteroidota 5.5%
- Bacillota 1.4%
- Cyanobacteriota 0.4%
- Thermodesulfobacteriota 0.2%
- Actinomycetota 0.2%
- Spirochaetota 0.1%
- everything else 0.1%
- Gammaproteobacteria 91.8%
- Bacteroidia 5.5%
- Desulfitobacteriia 1.3%
- Cyanobacteriia 0.3%
- Desulfuromonadia 0.2%
- Alphaproteobacteria 0.2%
- Sericytochromatia 0.2%
- everything else 0.5%
- Pseudomonadales 74.1%
- Burkholderiales 16.7%
- Flavobacteriales 5.4%
- Desulfitobacteriales 1.3%
- Enterobacterales 0.6%
- Halothiobacillales 0.4%
- Chloroplast 0.3%
- everything else 1.2%
- Pseudomonadaceae 72.6%
- Comamonadaceae 10.7%
- Flavobacteriaceae 5.4%
- Rhodocyclaceae 4.0%
- Incertae Sedis 1.7%
- Moraxellaceae 1.6%
- Hydrogenophilaceae 1.1%
- everything else 2.9%
- Pseudomonas 72.6%
- Rhodoferax 9.0%
- Lutibacter 5.2%
- Incertae Sedis 4.8%
- Acinetobacter 1.6%
- TC1 1.3%
- Thiobacillus 1.1%
- everything else 4.6%
- Pseudomonas stutzeri 35.7%
- Pseudomonas sp. SMX344 30.1%
- uncultured bacterium 15.5%
- Albidiferax ferrireducens 6.6%
- Pseudomonas sp. SRMND14A 3.0%
- Acinetobacter sp. 1.6%
- uncultured Acinetobacter sp. 1.6%
- everything else 5.9%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 94% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 92% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 86% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 85% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.