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SAMEA103980926
RLITMF uranium mine tailings 2014
- 1 run(s)
- Illumina MiSeq
- V4
- trimmed
derived from this sample's metadata and per-run QC
33,574
Reads
122
Observed features
1.858
Shannon
0.387
Evenness
122
Chao1
Where and when
- Collected
- 2014-08
- Depth
- not recorded
- Device
- not recorded
- Salinity
- not recorded
- Coordinates
- not recorded
- Platforms
- Illumina MiSeq
Runs
ERR1938177
Per-run QC
- 16S identity
- 99.8%
- Q30
- 91.3%
- Region
- V4
- Read length
- 251 bp
- PhiX
- 0.0%
- Adapter (worst)
- 0.0%
Most abundant features
- ASV_1 · Pseudomonas 374 (1.1%)
- ASV_1112 · Lutibacter 21,291 (63.4%)
- ASV_4445 · Pseudomonas 13 (0.0%)
Read share of the five largest features in this sample.
Taxonomic composition
- Bacteria 100.0%
- Archaea 0.1%
- Bacteroidota 67.0%
- Bacillota 19.8%
- Pseudomonadota 10.1%
- Thermodesulfobacteriota 1.7%
- Actinomycetota 0.9%
- Verrucomicrobiota 0.1%
- Planctomycetota 0.1%
- everything else 0.3%
- Bacteroidia 67.0%
- Clostridia 12.7%
- Gammaproteobacteria 9.2%
- Desulfitobacteriia 6.2%
- Desulfuromonadia 1.7%
- Actinobacteria 0.9%
- Alphaproteobacteria 0.9%
- everything else 1.4%
- Flavobacteriales 65.5%
- Burkholderiales 7.1%
- Clostridiales 6.3%
- Desulfitobacteriales 6.2%
- Peptostreptococcales-Tissierellales 6.2%
- Pseudomonadales 1.8%
- Bacteroidales 1.4%
- everything else 5.6%
- Flavobacteriaceae 65.5%
- Incertae Sedis 6.7%
- Clostridiaceae 6.3%
- Comamonadaceae 5.7%
- Fusibacteraceae 3.5%
- Prolixibacteraceae 1.4%
- Pseudomonadaceae 1.3%
- everything else 9.7%
- Lutibacter 65.5%
- Incertae Sedis 6.8%
- TC1 6.0%
- Rhodoferax 4.1%
- Fusibacter 3.5%
- Proteiniclasticum 1.9%
- Hydrogenophaga 1.5%
- everything else 10.8%
- uncultured bacterium 91.6%
- uncultured Flavobacterium sp. 2.1%
- Pseudomonas sp. SMX344 1.1%
- uncultured soil bacterium 0.8%
- Fusibacter tunisiensis 0.7%
- Acetoanaerobium pronyense 0.6%
- uncultured Micrococcineae bacterium 0.5%
- everything else 2.6%
Read share of the largest taxa at each rank, up to seven names per level. The dropdown switches level without reloading, so one page shows domain through species. Ranks are those assigned against SILVA 138.2 (SINTAX).
Similar samples
genus composition and metadata- composition 91% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- composition 62% similar (genus)
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
- same collection date
- shared: Illumina MiSeq, V4
Nearest samples within this study by Bray-Curtis similarity of their genus composition.
Missing or wrong data?
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Figures computed from the released count table and per-run QC reports. The release itself is at https://huggingface.co/datasets/hmacgregor/ampliconflow-releases/resolve/main/PRJEB20465-20260926/.